README.md

In susjoh/simperSNP: Simulates SNP Datasets For Simple And Complex Pedigrees With Recombination.

simperSNP

This package simulates SNP data sets for simple and complex pedigrees. Founder individuals are assigned haplotypes based on founder allele frequencies. Haplotypes are then transmitted to descendants with recombination sampled from linkage map distances. Crossover positions are reported alongside datasets.

This package is still in progress.

Plans for future versions: Modelling of crossover intereference. Sampling founders based on haplotype frequencies Simulation of QTL of specified effect sizes Gene-drop analyses accounting for population age structure

susjoh/simperSNP documentation built on May 30, 2019, 8:43 p.m.