pedigree.format: Format Pedigree This function formats the pedigree for...

In susjoh/simperSNP: Simulates SNP Datasets For Simple And Complex Pedigrees With Recombination.

Description

Format Pedigree This function formats the pedigree for downstream analysis.

Usage

pedigree.format(ped, pedigree.type = "simple")

Arguments

ped	Pedigree object in "simple" format (Three columns for ANIMAL, MOTHER and FATHER) or in "plink" format (Five to Six columns for FAMILY, ANIMAL, FATHER, MOTHER, SEX and Phenotype, where the phenotype column is optional). The simple argument can recognise the order of parents if they are named sensibly. Run simple.ped.name.rules() for an example.
pedigree.type	Defaults to "simple", can also accept "plink" which is equivalent for for first 5 to 6 columns of a PLINK .ped file.

susjoh/simperSNP documentation built on May 30, 2019, 8:43 p.m.