pdetection_occupied.ModelSite.theta: Probability of detection and occupation for a single...

In sustainablefarms/msod: Multispecies Occupancy Detection Models

Probability of detection and occupation for a single ModelSite and parameter set

Description

Probability of detection and occupation for a single ModelSite and parameter set

Usage

pdetection_occupied.ModelSite.theta(Xobs, det.b)

## S3 method for class 'ModelSite.theta'
poccupy(Xocc, occ.b, lv.b = NULL, lv.v = NULL)

Arguments

Xobs	A matrix of detection covariates, each row is a visit.
det.b	Covariate loadings. Each row is a species, each column a detection covariate
Xocc	A matrix of occupancy covariates. Must have a single row. Columns correspond to covariates.
occ.b	Covariate loadings for occupancy. Each row is a species, each column an occupancy covariate.
lv.b	Loadings for the latent variables. Each row is a species, each column corresponds to a LV.
lv.v	A matrix of LV values. Each column corresponds to a LV. To condition on specific LV values, provide a matrix of row 1.

Value

A matrix of detection probabilities for each row of Xobs and each species. Rows in returned value correspond to rows in Xobs, columns correspond to species.

A matrix of occupancy probabilities. Each row corresponds to a row of lv.v, each column to a species.

Methods (by generic)

• poccupy: The probability of occupation for given LV values.

sustainablefarms/msod documentation built on March 6, 2023, 7:17 a.m.