Files in svalvaro/MQanalyser

Analyse the proteomics LC-MS/MS data from MaxQuant.

R/check_software_input.R R/create_geneList.R R/plot_contaminants.R R/plot_correlationly.R R/plot_heatmap_missvals.R R/plot_heatmaply.R R/plot_histogram_imputed.R R/plot_normalization_interactive.R R/plot_pca_improved.R R/plot_profilely.R R/plot_protsidentified.R R/plot_scatterly.R R/plot_volcano.R R/test_limma.R README.md inst/shiny_app/global.R inst/shiny_app/server.R inst/shiny_app/server/blockTabs/blockTabs.R inst/shiny_app/server/tabDataInput/demo.R inst/shiny_app/server/tabDataInput/experimentDesign.R inst/shiny_app/server/tabDataInput/experimentNames.R inst/shiny_app/server/tabDataInput/intensityType.R inst/shiny_app/server/tabDataInput/popupStartandButton.R inst/shiny_app/server/tabDataInput/proteinInput.R inst/shiny_app/server/tabDataInput/softwareUsed.R inst/shiny_app/server/tabDataInput/userGenes.R inst/shiny_app/server/tabDisease/allPlots.R inst/shiny_app/server/tabDisease/warning.R inst/shiny_app/server/tabEnrichment/GOTable.R inst/shiny_app/server/tabEnrichment/GOplot.R inst/shiny_app/server/tabEnrichment/comparisons.R inst/shiny_app/server/tabEnrichment/elements.R inst/shiny_app/server/tabEnrichment/network.R inst/shiny_app/server/tabEnrichment/preRanked.R inst/shiny_app/server/tabHeatmap/heatmap.R inst/shiny_app/server/tabInteractions/interactions.R inst/shiny_app/server/tabPathway/pathwayPlotTable.R inst/shiny_app/server/tabPathway/pathwaySelector.R inst/shiny_app/server/tabPreprocessing/contaminants.R inst/shiny_app/server/tabPreprocessing/dataNormalization.R inst/shiny_app/server/tabPreprocessing/filteringNAs.R inst/shiny_app/server/tabPreprocessing/imputation.R inst/shiny_app/server/tabPreprocessing/summarisedExperiment.R inst/shiny_app/server/tabProfile/profile.R inst/shiny_app/server/tabReport/diseasePlotsReport.R inst/shiny_app/server/tabReport/downloadReport.R inst/shiny_app/server/tabReport/enrichmentPlotsReport.R inst/shiny_app/server/tabReport/expDesignReport.R inst/shiny_app/server/tabReport/interactionsReport.R inst/shiny_app/server/tabReport/pathwayReport.R inst/shiny_app/server/tabReport/preProcessingReport.R inst/shiny_app/server/tabReport/resultsPlotsReport.R inst/shiny_app/server/tabReport/sampleComparisonReport.R inst/shiny_app/server/tabResults/DEP.R inst/shiny_app/server/tabResults/resultsTabular.R inst/shiny_app/server/tabSampleComparison/correlation.R inst/shiny_app/server/tabSampleComparison/pca.R inst/shiny_app/server/tabSampleComparison/scatter.R inst/shiny_app/server/tabVolcano/volcano.R inst/shiny_app/ui.R inst/shiny_app/ui/tabPlots/tabSetCorrelation.R inst/shiny_app/ui/tabPlots/tabSetHeatmap.R inst/shiny_app/ui/tabPlots/tabSetPCA.R inst/shiny_app/ui/tabPlots/tabSetProfile.R inst/shiny_app/ui/tabPlots/tabSetScatter.R inst/shiny_app/ui/tabPlots/tabSetVolcano.R inst/shiny_app/ui/uiDataInput.R inst/shiny_app/ui/uiDisease.R inst/shiny_app/ui/uiEnrichmentAnalysis.R inst/shiny_app/ui/uiInteractions.R inst/shiny_app/ui/uiLogo.R inst/shiny_app/ui/uiPathwayAnalysis.R inst/shiny_app/ui/uiPreprocessing.R inst/shiny_app/ui/uiReport.R inst/shiny_app/ui/uiResults.R inst/shiny_app/ui/uiSampleComparisons.R inst/shiny_app/www/report/report.Rmd man/check_software_input.Rd man/create_geneList.Rd man/plot_contaminants.Rd man/plot_correlationly.Rd man/plot_heatmap_missvals.Rd man/plot_heatmaply.Rd man/plot_histogram_imputed.Rd man/plot_normalization_interactive.Rd man/plot_pca_improved.Rd man/plot_profilely.Rd man/plot_protsidentified.Rd man/plot_scatterly.Rd man/plot_volcano.Rd man/test_limma.Rd renv/activate.R