svenstringer/genematrix: Create a Table with Gene Annotation and Output in Convenient Format
Version 1.0.0

The GeneMatrix package is designed to create an annotated gene table based on Gencode gene definitions, with a focus on brain-related information. Gene definitions are based on Gencode, matched with entrez genes and the official HGNC gene names to create a core matrix. This preprocessed and filtered core matrix includes the final genes that can be annotated with third- party information. Currently the following annotations can be included: Exac pLI constraint scores for all exac subjects and subjects without a psychiatric disorder, Brain Expression levels and diffrential expression SCZ vs controls in PLFC based on Common Mind data, Gwas catalog hits, OMIM associations, Gene-based p-values for several brain-related phenotypes. This software is created in collaboration with Patrick Sullivan.

Getting started

Package details

Maintainer
LicenseNone
Version1.0.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("svenstringer/genematrix")
svenstringer/genematrix documentation built on May 26, 2017, 11:03 p.m.