svenstringer/genematrix
Create a Table with Gene Annotation and Output in Convenient Format

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compute_genebased_p: Compute gene-based pvalue based on daner summary stats file

compute_genebased_p: Compute gene-based pvalue based on daner summary stats file
In svenstringer/genematrix: Create a Table with Gene Annotation and Output in Convenient Format

Description Usage Arguments Value

Description

Computes gene-based pvalues with magma and saves them to file.

Usage

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compute_genebased_p(summary_file = NULL, output_prefix = NULL,
  annot_prefix = NULL, ref_file = NULL, snpmap_file = NULL,
  magma_executable = NULL, magma_model = "snp-wise=mean")

Arguments

settings

a list containing all

Value

filename with gene-based pvalues


svenstringer/genematrix documentation built on May 30, 2019, 8:48 p.m.

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