Files in sw1/themetagenomics
Exploring Thematic Structure and Predicted Functionality of 16s rRNA Amplicon Data

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/RcppExports.R R/cnn.R R/data_david.R R/data_gevers.R R/download_ref.R R/est.R R/estimate_function_effects.R R/estimate_topic_effects.R R/extract_effects.R R/find_topics.R R/fit_hmc.R R/fit_ml.R R/formatting.R R/picrust.R R/predict.R R/prepare_data.R R/print.R R/resume_hmc.R R/s.R R/t4f.R R/utils.R R/vis.R R/vis_covariates_binary.R R/vis_covariates_continuous.R R/vis_functions.R R/vis_taxa.R R/vis_topics.R README.Rmd README.md cran-comments.md
data/david.RData
data/gevers.RData
inst/CITATION
inst/references/16S_13_5_precalculated.tab.gz
inst/references/copy_numbers.rds
inst/references/kegg_lookup_table.rds
inst/testdata/otudata.rds
inst/testdata/otufuncdata.rds
inst/testdata/seqdata.rds
inst/testdata/seqfuncdata.rds
man/DAVID.Rd man/GEVERS.Rd man/cnn.Rd man/download_ref.Rd man/est.Rd man/est.functions.Rd man/est.topics.Rd man/est_topics_backend.Rd man/extract.Rd man/extract_stan_summary.Rd man/find_topics.Rd man/picrust.Rd man/picrust_otu.Rd man/predict.topics.Rd man/prepare_data.Rd man/resume.Rd man/s.Rd man/stm_wrapper.Rd man/t4f.Rd man/vis.Rd
src/.gitignore
src/Makevars
src/RcppExports.cpp
src/gzstream.cpp
src/gzstream.h
src/picrust_otu.cpp
src/themetagenomics_init.c
tests/testthat.R tests/testthat/test-cnn.R tests/testthat/test-function-effects.R tests/testthat/test-misc.R tests/testthat/test-predict.R tests/testthat/test-prepare.R tests/testthat/test-topic-effects.R tests/testthat/test-topics.R
themetagenomics.Rproj
vignettes/functional_prediction.Rmd vignettes/thematic_structure.Rmd
vignettes/theme_cont_t14_abund_1.png
vignettes/theme_cont_t14_abund_2.png
vignettes/theme_cont_t14_ppd.png
vignettes/theme_func_hm.png
vignettes/theme_func_tbl.png
vignettes/theme_taxa_corr.png
vignettes/theme_taxa_covw.png
vignettes/theme_taxa_ord.png
vignettes/theme_taxa_t5.png
vignettes/theme_taxa_t5_lambda.png
sw1/themetagenomics documentation built on May 20, 2019, 2:46 p.m.