cran-comments.md

In sw1/themetagenomics: Exploring Thematic Structure and Predicted Functionality of 16s rRNA Amplicon Data

This is a minor fix/update from 1.0.1 to 1.0.2.

Test environments

• OSX (travis-ci): R-release (3.6.2) [2/4/2020]
• ubuntu (travis-ci): R-release (3.6.2) [2/4/2020]
• ubuntu 16.10 (local machine): R 3.6.2
• win-builder: R-release (3.6.1) [2/5/2020]
• win-builder: R-devel (4.0.0) [2/5/2020]
• win 10 Pro v1903 (local machine): 4.0.0

R CMD check results

0 errors | 0 warnings | 0 notes

License

• License components with restrictions and base license permitting such: MIT + file LICENSE

Downstream dependencies

• None (first release)

Resubmission 1

• URLs: removed empty URLS; change biorxiv doi url to direct url; changed citation doi to biorxiv url
• Native routines and symbol search: ran package_native_routine_registration_skeleton() in R 3.4 and placed output in src/themetagenomics_init.c; added .registration = TRUE to useDynLib() in NAMESPACE
• Examples: wrapped all examples exceeding 10s with \dontrun
• Tests: added skip_on_cran() to all long tests

Resubmission 2

• Description: removed all mentions of the word 'library'
• Title: changed 16S to 16s per toTitleCase(); note that the term 16S should be capitalized, see wikipedia for the term 16S rRNA, but I changed it to 16s for this resubmission.

Resubmission 3

• Adjusted any use of class(x) to prevent issues from length 2 (matrix, array) output if matrix.

Resubmission 4

• Fixed lapply using class issue in tests

Resubmission 5

• Fixed stringsAsFactors issue for data.frame and read.table for R 4.0.0 release -- set all to FALSE

Resubmission 6

• Resubmission 5 caused an issue with one of the visualizations. Now fixed.

sw1/themetagenomics documentation built on May 24, 2020, 8:37 p.m.