In sw1/theseus: Analysis and Visualization Tools for Microbial Community Data
knitr::opts_chunk$set(collapse=TRUE,comment='#>',fig.path='README-')
Overview
theseus provides functions to assist in the analysis, visualization, and interpretation of community composition data, especially those originating from amplicon sequencing.
Relevant Software and Literature
Callahan, Sankaran, Fukuyama, McMurdie, and Holmes (2017) Bioconductor Workflow for Microbiome Data Analysis: from raw reads to community analyses
McMurdie and Holmes (2013) phyloseq: An R package for reproducible interactive analysis and graphics of microbiome census data
Oksanen,Blanchet, Friendly, Kindt, Legendre, McGlinn, Minchin, O'Hara, Simpson, Solymos, Stevens, Szoecs, and Wagner (2017) vegan: Community Ecology Package
Installation
# To install the release version of theseus:
install.packages('theseus')
# To install the developmental version via Github:
# install.packages('devtools')
devtools::install_github('sw1/theseus',build_vignettes=TRUE)
Development
For future feature requests or suggestions, request an issue:
https://github.com/sw1/theseus/issues
sw1/theseus documentation built on May 4, 2019, 4:22 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
knitr::opts_chunk$set(collapse=TRUE,comment='#>',fig.path='README-')
Overview
theseus provides functions to assist in the analysis, visualization, and interpretation of community composition data, especially those originating from amplicon sequencing.
Relevant Software and Literature
Callahan, Sankaran, Fukuyama, McMurdie, and Holmes (2017) Bioconductor Workflow for Microbiome Data Analysis: from raw reads to community analyses
McMurdie and Holmes (2013) phyloseq: An R package for reproducible interactive analysis and graphics of microbiome census data
Oksanen,Blanchet, Friendly, Kindt, Legendre, McGlinn, Minchin, O'Hara, Simpson, Solymos, Stevens, Szoecs, and Wagner (2017) vegan: Community Ecology Package
Installation
# To install the release version of theseus: install.packages('theseus') # To install the developmental version via Github: # install.packages('devtools') devtools::install_github('sw1/theseus',build_vignettes=TRUE)
Development
For future feature requests or suggestions, request an issue:
https://github.com/sw1/theseus/issues
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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