represent_enrichment: Graphic representation of enrichment
In sysbio-curie/ACSNMineR: Gene Enrichment Analysis from ACSN Maps or GMT Files

Description Usage Arguments Value Examples

Graphic representation of enrichment

1
2
3

represent_enrichment(enrichment, plot = "heatmap", scale = "log",
  low = "steelblue", high = "white", nrow = 1, sample_name = "Sample",
  na.value = "grey")

`enrichment`	Data frame or list of dataframes with p-values or corrected p-values (whenever available) and module names for representation. The name of the dataframe will be used as sample name.
`plot`	Any of "heatmap" or "bar"
`scale`	Any of "log", "identity" or "reverselog" (i.e. -log10(p-value))
`low`	Color to be used in heatmap mode corresponding to lowest value
`high`	Color to be used in heatmap mode corresponding to highest value
`nrow`	Number of rows of the grid for display in bar mode.
`sample_name`	used only is enrichment is a dataframe
`na.value`	color for the missing values in the heatmap

Function returns a ggplot2 object if input is a dataframe or a gridExtra object if the output is a list.

represent_enrichment(enrichment = enrichment_test,scale = "reverselog",
                    sample_name = "test",plot = "bar")

represent_enrichment(enrichment = list(SampleA = enrichment_test, 
                                     SampleB = enrichment_test[1:3,]), 
                     plot = "heatmap", scale = "log")