jss/scripts/DU145_heatmap.R

In sysbio-curie/ACSNMineR: Gene Enrichment Analysis from ACSN Maps or GMT Files

# a short RNaviCell script example

# load RNaviCell library

library(RNaviCell)

# create a NaviCell object and launch a server session
# this will automatically open a browser on the client

navicell <- NaviCell()
navicell$launchBrowser()

# import a gene expression matrix and
# send the data to the NaviCell server
# NB: the data_matrix object is a regular R matrix

data_matrix <- navicell$readDatatable('DU145_data.txt')
navicell$importDatatable("mRNA expression data", "DU145", data_matrix)

# set data set and sample for heat map representation

navicell$heatmapEditorSelectSample('0','data')
navicell$heatmapEditorSelectDatatable('0','DU145')
navicell$heatmapEditorApply()