FRA: FRA

In sysbiosig/SCRC: Fractional response analysis

Description

This function performs Fractional Response analysis, which quantifies changes in fractions of cells with given response levels.

Usage

FRA(
  data,
  signal = "signal",
  response = "response",
  sample = "sample",
  bootstrap.number = 0,
  bootstrap.sample_size = NULL,
  parallel_cores = 1,
  ...
)

Arguments

data	A data.frame or data.table object in a wide format that describe response (might be multidimmensional) of the samples to the signal (now only one dimmensional). Data.frame data consists columns of names defined by sample, signal (optional), and response. Each row represents a response of one sample to the input signal. Column signal define the input signal (now only in one-dimmension). Columns response define the multidimmensional (optional) response to the input signal. Column sample specify identifaction of sample. If sample is not defined then sample is identified by row number.
signal	character, specify name of the column that represents the input signal
response	vector of chartacters, that specify names of the columns that represents the output response
sample	character (optional), specify name of the column that consists identifiaction of sample
bootstrap.number	default = 1
bootstrap.sample_size	default = NULL
bootstrap	default = FALSE

Value

FRA S3 object with

sysbiosig/SCRC documentation built on July 9, 2021, 9:22 p.m.