Files in systemPipeR/systemPipeShiny

systemPipeShiny: An Interactive Framework for Workflow Management and Visualization

..Rproj

.Rbuildignore

.Rprofile

.github/bash/update_man.sh

.github/reference_hash/man_hash.txt

.github/workflows/R-CMD-check.yml

.github/workflows/update_man.yaml

.gitignore

DESCRIPTION

NAMESPACE

NEWS.md R/canvas.R R/load_guide.R R/overwrite_core_tabs.R R/page_admin.R R/page_admin_login.R R/page_user.R R/page_user_login.R R/parse_notification.R R/plotWF.R R/run_DESeq2.R R/spsClasses.R R/spsCore.R R/spsCoreServer.R R/spsCoreUI.R R/spsLoading.R R/spsNewtab.R R/spsPlugin.R R/spsServerCollections.R R/spsUIcollections.R R/spsUti.R R/subsetRmd.R R/tab_admin_info.R R/tab_admin_users.R R/tab_core_about.R R/tab_core_canvas.R R/tab_core_right.R R/tab_core_top.R R/tab_core_welcome.R R/tab_module_main.R R/tab_vs_esq.R R/tab_vs_main.R R/tab_vs_rnaseq.R R/tab_vs_rnaseq_data.R R/tab_vs_rnaseq_deg.R R/tab_vs_rnaseq_normal.R R/tab_vs_rnaseq_plots.R R/tab_wf.R R/tab_wf_cwl.R R/tab_wf_run.R R/tab_wf_setup.R R/tab_wf_target.R R/tab_wf_wf.R R/tab_wf_wf_bk.R R/tab_wf_wf_helper.R R/test_admin.R R/zzz.R README.md

_pkgdown.yml

docs/authors.html

docs/index.html

docs/news/index.html

docs/reference/Rplot001.png

docs/reference/canvasBtn.html

docs/reference/dynamicFile.html

docs/reference/genGallery.html

docs/reference/genHrefTable.html

docs/reference/index.html

docs/reference/loadDF.html

docs/reference/removeSpsTab.html

docs/reference/sps.html

docs/reference/spsAccount.html

docs/reference/spsCoreTabReplace.html

docs/reference/spsDb.html

docs/reference/spsEncryption.html

docs/reference/spsEzUI.html

docs/reference/spsInit.html

docs/reference/spsNewTab.html

docs/reference/spsOptDefaults.html

docs/reference/spsTabInfo.html

index.md

inst/CITATION

inst/app/R/README.md inst/app/R/guide_content.R inst/app/R/tab_vs_example.R inst/app/README.md inst/app/app_ez/global.R inst/app/app_ez/server.R inst/app/app_ez/ui.R

inst/app/bash/get_cpu.sh

inst/app/config/README.md

inst/app/config/sps_options.yaml

inst/app/config/tabs.csv

inst/app/data/README.md

inst/app/data/hisat2.cwl

inst/app/data/hisat2.yml

inst/app/data/iris.csv

inst/app/data/rna_raw_count.tsv

inst/app/data/targets.txt

inst/app/data/targetsPE.txt

inst/app/deploy.R inst/app/results/README.md inst/app/templates/data_tab_template.R inst/app/templates/data_tab_template_empty.R inst/app/templates/plot_tab_template.R inst/app/templates/plot_tab_template_empty.R inst/app/templates/spr_simple_wf.Rmd inst/app/templates/tab_template_ez.R inst/app/templates/tab_template_full.R

inst/app/templates/targets_gunzip.txt

inst/app/www/css/sps.css

inst/app/www/css/sps_admin.css

inst/app/www/css/sps_esq.css

inst/app/www/css/sps_login.css

inst/app/www/css/sps_rnaseq.css

inst/app/www/css/sps_welcome.css

inst/app/www/css/sps_wf.css

inst/app/www/css/sps_wf_wf.css

inst/app/www/img/Untitled.svg

inst/app/www/img/chipseq.png

inst/app/www/img/cwl.png

inst/app/www/img/drawer.png

inst/app/www/img/empty.png

inst/app/www/img/example.png

inst/app/www/img/exist.png

inst/app/www/img/ggplot.png

inst/app/www/img/logo.png

inst/app/www/img/noimg.png

inst/app/www/img/riboseq.png

inst/app/www/img/rnaseq.png

inst/app/www/img/rnaseq_notext.png

inst/app/www/img/spr.png

inst/app/www/img/spr_notext.png

inst/app/www/img/sps-rnaseq.png

inst/app/www/img/sps_small.png

inst/app/www/img/varseq.png

inst/app/www/img/visualization.png

inst/app/www/js/micro.js

inst/app/www/js/split1.6.0.js

inst/app/www/js/sps.js

inst/app/www/js/sps_admin.js

inst/app/www/js/sps_admin_info.js

inst/app/www/js/sps_admin_user.js

inst/app/www/js/sps_esq.js

inst/app/www/js/sps_rnaseq.js

inst/app/www/js/sps_user.js

inst/app/www/js/sps_welcome.js

inst/app/www/js/sps_wf.js

inst/app/www/js/sps_wf_wf.js

inst/app/www/js/sps_wf_wf_sort.js

inst/app/www/js/vanilla-tilt.js

inst/app/www/js/vanilla-tilt.min.js

inst/app/www/loading_themes/LICENSE-particlesjs.md

inst/app/www/loading_themes/biomatrix.html

inst/app/www/loading_themes/double-helix.js

inst/app/www/loading_themes/easeljs.min.js

inst/app/www/loading_themes/empty.html

inst/app/www/loading_themes/hhelix.html

inst/app/www/loading_themes/hhelix.js

inst/app/www/loading_themes/nyan.css

inst/app/www/loading_themes/nyan.html

inst/app/www/loading_themes/particles.min.js

inst/app/www/loading_themes/vhelix.css

inst/app/www/loading_themes/vhelix.html

inst/app/www/plot_list/plot_bar.png

inst/app/www/plot_list/plot_dendro.png

inst/app/www/plot_list/plot_gpca.png

inst/app/www/plot_list/plot_heatmap.png

inst/app/www/plot_list/plot_mds.png

inst/app/www/plot_list/plot_pca.png

inst/app/www/plot_list/plot_point.png

inst/app/www/plot_list/plot_tsne.jpg

inst/app/www/plot_list/plot_tsne.png

inst/depend/use_pkg.R

inst/remote_resource/notifications.yaml

inst/remote_resource/notifications_internal.yaml

man/canvasBtn.Rd man/dynamicFile.Rd man/genGallery.Rd man/genHrefTable.Rd man/loadDF.Rd man/removeSpsTab.Rd man/sps.Rd man/spsAccount.Rd man/spsCoreTabReplace.Rd man/spsDb.Rd man/spsEncryption.Rd man/spsEzUI.Rd man/spsInit.Rd man/spsNewTab.Rd man/spsOptDefaults.Rd man/spsTabInfo.Rd tests/testthat.R tests/testthat/_snaps/04imports.md tests/testthat/test-01sps_core.R tests/testthat/test-02interactive_funcs.R tests/testthat/test-03sps_tabs.R tests/testthat/test-04imports.R

vignettes/bibtex.bib

vignettes/img/app_start.png

vignettes/img/resize_icon.png

vignettes/img/sps_canvas.jpg

vignettes/img/sps_quickgg.jpg

vignettes/img/sps_rna_data.jpg

vignettes/img/sps_rna_deg.jpg

vignettes/img/sps_rna_norm.jpg

vignettes/img/sps_rna_plot.jpg

vignettes/img/sps_structure.png

vignettes/img/sps_ui_config.png

vignettes/img/sps_ui_main.jpg

vignettes/img/sps_ui_target.jpg

vignettes/img/sub_step_icon.png

vignettes/systemPipeShiny.Rmd

systemPipeR/systemPipeShiny documentation built on Oct. 17, 2023, 3:40 a.m.