Files in szymczak-lab/QCnormSE
Quality Control of Normalized Gene Expression Data
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/aggregate_genes.R
R/check_batch_effects.R
R/check_sex.R
R/combine_se_objects.R
R/data.R
R/detect_duplicated_samples.R
R/extract_geo_characteristics.R
R/get_geo_data.R
R/log_transform.R
R/normalize_counts.R
R/plot_distribution.R
R/plot_mds_pca.R
R/remove_genes.R
R/remove_samples.R
R/utilities.R
README.Rmd
README.md
data-raw/DATASET.R
data/info.sex.genes.rda
data/se.gene.rda
data/se.probeset.rda
man/aggregate_by_new_id.Rd
man/calculate_mds_pca.Rd
man/check_batch_effects.Rd
man/check_sex.Rd
man/combine_se_objects.Rd
man/define_batches.Rd
man/detect_duplicated_samples.Rd
man/extract_detection_pvalue.Rd
man/extract_geo_characteristics.Rd
man/extract_scan_date.Rd
man/get_geo_data.Rd
man/info.sex.genes.Rd
man/log_transform.Rd
man/normalize_counts.Rd
man/plot_distribution.Rd
man/plot_heatmap.Rd
man/plot_mds_pca.Rd
man/plot_mds_pca_2d.Rd
man/remove_genes.Rd
man/remove_samples.Rd
man/se.gene.Rd
man/se.probeset.Rd
vignettes/.gitignore
vignettes/users_guide.Rmd
