extract_detection_pvalue: Extract detection P value

In szymczak-lab/QCnormSE: Quality Control of Normalized Gene Expression Data

Extract detection P value

Description

Extracts detection P value information from each sample file.

Usage

extract_detection_pvalue(accession, se)

Arguments

accession	Character. Identifier of GEO data set (GSEXXX).
se	RangedSummarizedExperiment-class object

Value

RangedSummarizedExperiment-class object with detection P value added as assay with the name detection.pvalue.

Examples

data("se.probeset")

se.probeset = extract_detection_pvalue(se = se.probeset,
                                       accession = "GSE6710")

szymczak-lab/QCnormSE documentation built on March 25, 2023, 1:05 p.m.