calc_cc | Calculate cloud cover |
calc_dens | Calculate water density from temperature |
calc_swr | Calculate SWR using calculation within GOTM |
conv_hypso | Convert hypsograph to rLakeAnalyzer format |
Corner_text | Add text to the corner of a plot |
dbsummary | Summarise ACPy database |
diag_plots | Produces model diagnostic plots |
extractDepths | Extract values at a depth or series of depths |
get_1d | Extract 1-D variable from NetCDF file |
get_flux | Extract fluxes from NetCDF file |
get_param | Extract dataframe of all parameters from ACPy database |
get_vari | Extract variables from NetCDF file |
gotm_heatmap | Create heatmap from GOTM output |
init_prof | Create initial profile for GOTM |
input_nml | Edit nml file |
input_xml | Edit XML file |
input_yaml | Input values into yaml file |
key_dates | Locate stratification or ice on/off dates |
list_vars | List variables within the NetCDF file |
load_3d | Load 3d model variable |
load_depths | Load layers file |
load_input | Load inflow input files |
load_obs | Load GOTMobservation file |
long_heatmap | Create heatmap from observed files for acpy |
long_lineplot | Create line plot from observed temperature in long format |
match_tstep | Match the timestep of two dataframes |
normDepths | Normalize depths of modelled output |
plot_calib | Plot results from the database |
plot_ext | Plot light extinction parameters |
plot_flux | Plot fluxes from NetCDF file |
plot_hypso | Plot hypsograph data |
plot_inp | Plot extra inputs |
plot_mass_flux | Plot mass fluxes from NetCDF file |
plot_meteo | Plot Meteo data |
plot_month_prof | Plot monthly average profiles |
plot_vari | Plot any variable from netcdf file |
plot_wbal | Plot water balance from NetCDF file |
plot_wtemp | Plot wtemp from netcdf file |
readAcpyParams | Read ACPy configuration file and extract ranges |
read_bestparam | Extract dataframe of best parameters from DB |
scan_timeseries | Extract start and stop dates from a GOTM input file |
setAcpyDb | Set ACPy database |
setmodDepths | Extract modelled temperature at observation depths |
setRange | Set parameter ranges for ACPy |
setspinup | Set spin up year for ACPy |
sum_stat | Caclulate summary stats of mod v obs |
sum_stat_1var | Caclulate summary stats of one variable |
ts_mld | Create a timeseries of mixed layer depth |
ts_ss | Calculate Schimidt Stability timeseries |
ts_stat | Calculate time-series over a depth dependent variable |
ts_whole_laketemp | Calculate total lake temperature timeseries |
view_init | View inital profile |
view_nc | View NetCDF file |
wide2long | Converts wide data to long data |
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