xrecepter: wrapper for medicin macro
In tagteam/heaven: Data Preparation Routines for Medical Registry Data

xrecepter

R Documentation

wrapper for medicin macro

Description

wrapper for medicin macro

Usage

xrecepter(
  drugdb,
  adm,
  atc,
  window = 5,
  value,
  min,
  max,
  def,
  maxdepot,
  period = c("'01jan1995'd", "'31dec2015'd"),
  name = "adrug",
  user,
  wd,
  sas.program = "/usr/local/bin/sas ",
  sas.switches,
  sas.runner,
  macro = "~/research/SoftWare/heaven/sas/medicin_macro_version_31.sas",
  save.tmp = FALSE,
  verbose = TRUE,
  server = "doob",
  remote = FALSE,
  remote.home,
  left_only = 1
)

Arguments

`drugdb`	drugdb data
`adm`	admission data
`atc`	atc kode specifying drugdb of interest
`window`	number of purchases that enter the calculations
`value`	is a vector of strengths of one unit (e.g., pill) of the drug. The vector should have one such strength for each of the different packages that occur in the data.
`min`	is a vector of the same length as `value` where each element is the assumed minimum total dosis that a patient can consume on one day. For example, if the value is 50 mg and the pills of this strength can be cut (in halves) the minimum total dosis is 25 mg.
`max`	is a vector of the same length as `value` where each element is the assumed maximum total dosis that a patient can consume on one day. For example, if the value is 50 mg and one can at most consume 4 pills a day the maximum total dosis is 200 mg.
`def`	is a vector of the same length as `value` where each element is the assumed default dosis that an average patient would consume on one day. For example, if the value is 50 mg and usually a patient would consume 2 pills the default is 100 mg.
`maxdepot`	Maximum number of units that a patient can stash
`period`	Vector of two dates that SAS can eat: c("'01jan1995'd","'31dec2015'd"). Can also be numeric values: number of days since 1960-01-01.
`name`	working name of output file (only relevant when save.tmp is set)
`user`	user name on remote (unix like) machine
`wd`	working directory
`sas.program`	path to sas program
`sas.switches`	On linux this defaults to "" on any other system to `"-batch -nosplash -noenhancededitor -sysin"`
`sas.runner`	How sas is invoked. On linux this defaults to `"system"` on any other system to `"shell"`.
`macro`	path to sas macro
`save.tmp`	if TRUE do not delete the temporary SAS files
`verbose`	like bla bla?
`server`	name of remote (unix like) machine
`remote`	if TRUE run on a remote (unix like) machine
`remote.home`	home folder on remote (unix like) machine
`left_only`	- when 1 only use prior prescription, when 0 use prior and future prescriptions.

Details

wrapper for medicin macro

Author(s)

Thomas A. Gerds <tag@biostat.ku.dk>

Examples

library(heaven)
## Not run: 
 library(heaven)
library(data.table)
set.seed(05021992)
N=18
packs = list("R03AK11"=list(c(10,1)))
lmdb=simPrescriptionData(N,packages=packs,max.packages=1)
lpr=simAdmissionData(N)
## very simple data 
lmdb <- lmdb[c(1,4,18)]
R03 = list(atc=c("R03AK11"),
          maxdepot=100,
          period=as.Date(c("1995-01-01", "2012-12-31")),
           prescriptionwindow=2,
          doses=list(value=c(5,10),
                     min = c(.5,.5),
                     max = c(2,2),
                     def = c(1,1)))
xrecepter(drugdb=lmdb,adm=lpr,window=5,remote=FALSE,wd="~/tmp",save.tmp=0L,
          value=rep(R03$doses$value,2),min=rep(R03$doses$min,2),max=rep(R03$doses$max,2),
          def=rep(R03$doses$def,2),maxdepot=100,period=c(12784,20089),atc="R03AK11",
          name="blaupill",sas.program="/usr/local/bin/sas",
          verbose=FALSE)

## End(Not run)

tagteam/heaven documentation built on April 26, 2024, 6:22 a.m.