Man pages for taiawu/dsfworld_package
Visualizes and Analyzes Differential Scanning Fluorimetry Data
| abort_bad_argument | Generate helpful error messages for invalid function inputs |
| add_component_predictions | Add predictions for individual model components |
| add_drfu_tmas | Add drfu tmas as a column to nested dsf data |
| add_estimates | Add estimates for key feautres in data |
| add_facet_grid | Add specific facet grids to to a ggplot2 object |
| add_facet_wrap_10 | Add specific facet wrapping to to a ggplot2 object |
| add_model_fits | Add fits and associated apparent melting temperatures for a... |
| add_model_preds | Add model predcition to nested data. |
| add_model_stats | Add statistics |
| add_model_tmas | Add dRFU tmas to nested dataframe |
| add_nls | Add model fits to nested data |
| add_standard_preds | Add standard predictions from modelr to data. |
| add_start_pars | Generate named list of starting parameters for dsfworld... |
| annotate_tidied_components | Annotate tidied components |
| blank_label_plot | Create blank ggplot with a label |
| cluster_estimates | Cluster both estimated transitions |
| convert_heights | Not exported: helper function for the 'save_stacked_plots()'... |
| drop_and_pivot | Drop unneeded columns from data, and pivot longer |
| estimate_one | Estimate a key value (either transition or starting RFU) for... |
| extract_component_tma | Extract component tmas |
| extract_model_tmas | Extract model tmas |
| extract_plate_layout | Extract layout from labeled plate data |
| force_panel_sizing | Set specific panel sizes |
| formulas | Formulas and defaults for dsfworld models |
| get_component_exprs | Extract indiviidual component expressions from model formulas |
| get_component_predictions | Get component predictions |
| get_drfu_tmas | Calculate apparent melting temperatures using first... |
| get_estimates | Estimate key values from in a single trace of DSF data. |
| get_model_fits | Fit a single model to a nested tibble contaiing multiple... |
| get_nls | Fit a given formula to single trace of DSF data |
| get_start_pars | Select and format estimates for model starting parameters |
| hclust_points | Identify clusters within a numeric integer vector |
| join_with_preds | Combine raw and modeled data |
| label_data | Join raw data and plate layout tibbles into a single, labeled... |
| label_dye_screen | Label and clean dye screen data |
| make_figure_title | Automatically generate acceptable figure and plot titles from... |
| plot_analyzed_hits | Plot |
| plot_dye_screen | Map dye screen aesthetics to a ggplot |
| plot_subscreen | Plot a dye screen for a subset of dyes, and either wrap or... |
| plot_with_preds | Plot raw and predicted data together, with Tmas |
| predict_component | Predict y values for an individual component |
| pull_assigned | Not exported: helper function to the 'save_stacked_plots()'... |
| rank_estimates | Rank estimated transitions by their predicted importance |
| read_plate_layout | Read a plate layout file into a tibble |
| read_qtower | Read raw data file as exported from a qTower |
| save_dye_screen_figs | Save dye screen figures |
| save_full_screen | Create and save all raw data from the screen, before... |
| save_model_figure | Save a figure displaying raw data, fits, and tmas. Use... |
| save_stacked_hits | Create and save dyes called as "hits" or "sensitives" in a... |
| save_stacked_plots | Save dye screen plots with sensible dimensions and... |
| save_stacked_screen | Create and save full dye screen, sub-plotted by assignment |
| sgolay | Wrapper for Savistky-Golay filtering |
| theme_screen_austere | Default dye screen plot theme |
| tidy_dye_screen | Tidy dye screens, combine buffer and protein data |
| tidy_estimates | Clean and format estimates for get_estimates. |
| tidy_for_plot | Tidy model data for plotting |
| tidy_for_tmas | Tidy raw dsf dataframe for tma calculations |
