Description Usage Arguments Value Author(s) Examples
Estimate the optimal number of genes to construct QuEST model
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x |
A data matrix (row: samples, col: genes). |
y |
A vector of an environment in which the samples were collected. |
newx |
(optional) A data matrix for validation. Columns of newx and x must be identical (default: NULL). |
newy |
(optional) A vector for validation (default: NULL). |
range |
A sequence of numbers of genes to be tested for MAE calculation (default: 5:50). |
method |
A string to specify the method of regression for calculating R-squared values. "linear" (default), "quadratic" or "cubic" regression model can be specified. |
rep |
The number of replications for each case set by range (default: 1). |
signif |
If TRUE, 95 will be illustrated on the resulting plot (default: FALSE). |
A sample-MAE curve
Takahiko Koizumi
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