Description Usage Arguments Value Author(s) Examples
Visualize gene expression similarity using principal coordinate analysis
1 |
x |
A data matrix (row: samples, col: genes). |
y |
A vector of an environment in which the samples were collected. |
method |
A string to specify the method of regression for calculating R-squared values. "linear" (default), "quadratic" or "cubic" regression model can be specified. |
lower.thr |
The lower threshold of R-squared value to be indicated in a PCA plot (default: 0). |
n.gene |
The number of candidate genes for QuEST model to be indicated in a PCA plot (default: ncol(x)). |
size |
The size of symbols in a PCA plot (default: 1). |
A PCA plot
Takahiko Koizumi
1 2 3 4 |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.