dream4: time-course gene expression profile with 10 genes from...
In takenakayoichi/tacs: Time Course Analysis of Control strength toward nodes/gene expression on directed graph based on Information Criterion.
Description
Usage
Format
Author(s)
Source
Description
This data set includes one time-course gene expression profile
used in Dream4 in silico network challenge held in 2009.
Usage
1
Format
a list. $exp: gene expression profile, $net: gene regulatory network, $segment: 21 time points x 5 experiments, $comment:comment to get acyclic graph
Author(s)
Marbach D, Prill RJ, Schaffter T, Mattiussi C, Floreano D, and Stolovitzky G. Revealing strengths and weaknesses of methods for gene network inference. PNAS, 107(14):6286-6291, 2010.
Marbach D, Schaffter T, Mattiussi C, and Floreano D. Generating Realistic in silico Gene Networks for Performance Assessment of Reverse Engineering Methods. Journal of Computational Biology, 16(2) pp. 229-239, 2009.
Prill RJ, Marbach D, Saez-Rodriguez J, Sorger PK, Alexopoulos LG, Xue X, Clarke ND, Altan-Bonnet G, and Stolovitzky G. Towards a rigorous assessment of systems biology models: the DREAM3 challenges. PLoS ONE, 5(2):e9202, 2010.
Source
DREAM4 - In Silico Network Challenge
takenakayoichi/tacs documentation built on May 31, 2019, 2:50 a.m.
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Description Usage Format Author(s) Source
Description
This data set includes one time-course gene expression profile used in Dream4 in silico network challenge held in 2009.
Usage
1 |
Format
a list. $exp: gene expression profile, $net: gene regulatory network, $segment: 21 time points x 5 experiments, $comment:comment to get acyclic graph
Author(s)
Marbach D, Prill RJ, Schaffter T, Mattiussi C, Floreano D, and Stolovitzky G. Revealing strengths and weaknesses of methods for gene network inference. PNAS, 107(14):6286-6291, 2010. Marbach D, Schaffter T, Mattiussi C, and Floreano D. Generating Realistic in silico Gene Networks for Performance Assessment of Reverse Engineering Methods. Journal of Computational Biology, 16(2) pp. 229-239, 2009. Prill RJ, Marbach D, Saez-Rodriguez J, Sorger PK, Alexopoulos LG, Xue X, Clarke ND, Altan-Bonnet G, and Stolovitzky G. Towards a rigorous assessment of systems biology models: the DREAM3 challenges. PLoS ONE, 5(2):e9202, 2010.
Source
DREAM4 - In Silico Network Challenge
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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