README.md
In tallulandrews/scTarNet: Single-cell Targetted Network Inference
scTarNet
This package provides the network inference method used in:
Bergiers I, Andrews T, et. al. (2018) Single-cell transcriptomics reveals a new dynamical function of transcription factors during embryonic hematopoiesis. eLife. doi: 10.7554/eLife.29312
It builds networks based on an input set of transcription factors and tests for indirect relationships and TF-TF interactions using distance correlations from the "energy" package.
The current version is highly parallelized but not yet optimized for large datasets. We are currently working on optimizing all parts of the code, and regular updates will be made as this progresses.
Installation :
require("devtools")
install_github('tallulandrews/scTarNet')
tallulandrews/scTarNet documentation built on May 31, 2019, 2:27 p.m.
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scTarNet
This package provides the network inference method used in: Bergiers I, Andrews T, et. al. (2018) Single-cell transcriptomics reveals a new dynamical function of transcription factors during embryonic hematopoiesis. eLife. doi: 10.7554/eLife.29312
It builds networks based on an input set of transcription factors and tests for indirect relationships and TF-TF interactions using distance correlations from the "energy" package.
The current version is highly parallelized but not yet optimized for large datasets. We are currently working on optimizing all parts of the code, and regular updates will be made as this progresses.
Installation :
require("devtools")
install_github('tallulandrews/scTarNet')
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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