tallulandrews/scTarNet: Single-cell Targetted Network Inference

This package uses partial correlations to identify interactions between a set of user-provided transcription factors. Uses distance- and spearman- correlations to deal with non-gaussian single-cell RNASeq data.

Getting started

Package details

AuthorTallulah Andrews <[email protected]>
Bioconductor views GeneExpression GraphAndNetwork RNASeq Sequencing Software Transcriptomics
MaintainerTallulah Andrews <[email protected]>
LicenseGPL (>=2)
Version0.01.00
URL https://github.com/tallulandrews/scTarNet
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("tallulandrews/scTarNet")
tallulandrews/scTarNet documentation built on Sept. 11, 2018, 5:47 a.m.