Man pages for tamartsi/Aclust
Clustering functions and analysis pipeline for methylation outcome data based on clustering and GEEs
| Acluster | A-clustering |
| Aclust-package | Aclust package implements the A-clustering algorithm and... |
| annot | Annotation for the probes on chromosome 7 in the Illumina... |
| annot.clusters | Annotate vectors of Illumina probe names, each vector... |
| annot.probe.vec | Annotate vector of Illumina probe names |
| assign.to.clusters | cluster a set of probes |
| betas.7 | Methylation data (beta values) from chromosome 7. |
| calc.dist.clusters | INTERNAL |
| calc.dist.clust.point | INTERNAL |
| calc.dist.d.neighbor | INTERNAL |
| create.annot.triche | Create an annotation to a vector of probes |
| Dbp.merge | Dbp-merge |
| expit | expit |
| first | The first entry in a vector |
| GEE.clusters | Performs GEE analysis of exposure effect on clusters of CpG... |
| last | The last entry in a vector |
| load.annotation | Load annotation table |
| logit | logit |
| order.betas.by.chrom.location | Organizes a matrix of methylation values to be ordered by... |
| organize.island.repeated | INTERNAL |
| plot.cor.clusts | Plots clusters on a heatmap ofa correlation matrix |
| print.clusters.gee.summary | INTERNAL |
| print.site.analysis | INTERNAL |
| summarize.top.clusters | Summarize the top clusters |
| update.clust.indicator | INTERNAL |
