Man pages for tamartsi/Aclust
Clustering functions and analysis pipeline for methylation outcome data based on clustering and GEEs

AclusterA-clustering
Aclust-packageAclust package implements the A-clustering algorithm and...
annotAnnotation for the probes on chromosome 7 in the Illumina...
annot.clustersAnnotate vectors of Illumina probe names, each vector...
annot.probe.vecAnnotate vector of Illumina probe names
assign.to.clusterscluster a set of probes
betas.7Methylation data (beta values) from chromosome 7.
calc.dist.clustersINTERNAL
calc.dist.clust.pointINTERNAL
calc.dist.d.neighborINTERNAL
create.annot.tricheCreate an annotation to a vector of probes
Dbp.mergeDbp-merge
expitexpit
firstThe first entry in a vector
GEE.clustersPerforms GEE analysis of exposure effect on clusters of CpG...
lastThe last entry in a vector
load.annotationLoad annotation table
logitlogit
order.betas.by.chrom.locationOrganizes a matrix of methylation values to be ordered by...
organize.island.repeatedINTERNAL
plot.cor.clustsPlots clusters on a heatmap ofa correlation matrix
print.clusters.gee.summaryINTERNAL
print.site.analysisINTERNAL
summarize.top.clustersSummarize the top clusters
update.clust.indicatorINTERNAL
tamartsi/Aclust documentation built on May 27, 2017, 2:14 a.m.