Acluster | A-clustering |
Aclust-package | Aclust package implements the A-clustering algorithm and... |
annot | Annotation for the probes on chromosome 7 in the Illumina... |
annot.clusters | Annotate vectors of Illumina probe names, each vector... |
annot.probe.vec | Annotate vector of Illumina probe names |
assign.to.clusters | cluster a set of probes |
betas.7 | Methylation data (beta values) from chromosome 7. |
calc.dist.clusters | INTERNAL |
calc.dist.clust.point | INTERNAL |
calc.dist.d.neighbor | INTERNAL |
create.annot.triche | Create an annotation to a vector of probes |
Dbp.merge | Dbp-merge |
expit | expit |
first | The first entry in a vector |
GEE.clusters | Performs GEE analysis of exposure effect on clusters of CpG... |
last | The last entry in a vector |
load.annotation | Load annotation table |
logit | logit |
order.betas.by.chrom.location | Organizes a matrix of methylation values to be ordered by... |
organize.island.repeated | INTERNAL |
plot.cor.clusts | Plots clusters on a heatmap ofa correlation matrix |
print.clusters.gee.summary | INTERNAL |
print.site.analysis | INTERNAL |
summarize.top.clusters | Summarize the top clusters |
update.clust.indicator | INTERNAL |
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