importDFAM: Import TE intervals in DFAM format
In tanaylab/reputils: Utility functions for working with transposable elements
Description
Usage
Arguments
Value
Description
Imports TE interval coordinates from DFAM database
Usage
1
importDFAM(path, curate = FALSE, main_assembly = TRUE)
Arguments
path
Character. Path to file.
curate
Logical. If TRUE, calls 'curateTEs' to resolve overlapping TE intervals.
main_assembly
Logical. If TRUE (the default), only returns TE intervals on the main chromosomes.
Value
Returns a GRanges object with TE intervals
tanaylab/reputils documentation built on Nov. 5, 2019, 9:58 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Imports TE interval coordinates from DFAM database
Usage
1 | importDFAM(path, curate = FALSE, main_assembly = TRUE)
|
Arguments
path |
Character. Path to file. |
curate |
Logical. If TRUE, calls 'curateTEs' to resolve overlapping TE intervals. |
main_assembly |
Logical. If TRUE (the default), only returns TE intervals on the main chromosomes. |
Value
Returns a GRanges object with TE intervals
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.