Description Usage Arguments Value
Import TE intervals from UCSC table browser
1 2 | importUCSC(path = "path to UCSC RMSK file", curate = FALSE,
main_classes = TRUE, main_assembly = TRUE)
|
path |
Character. Path to file. |
curate |
Logical. If TRUE, calls 'curateTEs' to resolve overlapping TE intervals. |
main_classes |
Logical. If TRUE (the default), only returns TE intervals unambiguously belonging to DNA, LINE, SINE, and LTR classes. |
main_assembly |
Logical. If TRUE (the default), only returns TE intervals on the main chromosomes. |
Returns a GRanges object with TE intervals
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