API for tangshao2016/neoantigenR
neoantigen prediction from NGS sequencing data
| Global functions | |
|---|---|
| att.info | Man page |
| chosen.column.indicies | Man page |
| compute.database.exon.details | Man page |
| compute.query.exon.details | Man page |
| coverage.file | Man page |
| dataDir | Man page |
| find.indels.location.by.location | Man page Source code |
| gene.df.pacbio | Man page |
| gff.file | Man page |
| gff.names | Man page |
| mainDir | Man page |
| max.mismatch.size | Man page |
| min.mismatch.size | Man page |
| minimum.flanking.region.size | Man page |
| minimum.sequence.similarity | Man page |
| neoantigenR.get.Model | Man page Man page Source code Source code |
| neoantigenR.get.peptides | Man page Source code |
| neoantigenR.initialize | Man page Man page Source code Source code |
| neoantigenR.write | Man page Man page Source code Source code |
| org | Man page |
| output.folder | Man page |
| pacbio.gencode.overlapping.file | Man page |
| pacbio.gff | Man page |
| pacbio.isof.ids | Man page |
| percOverlap | Man page |
| protein.database.file.name | Man page |
| reference.gff | Man page |
| reference.gff.file | Man page |
| reference.gff.info | Man page |
| reference.gff.info.chosen | Man page |
| refseq.pacbio.name.ids | Man page |
| retrieve.geneName.pacbioID.mapping.v2 | Man page Source code |
| sample.pacbio.gencode.id.mapping | Man page |
| target.gene.list | Man page |
| uniprot.human.database | Man page |
| uniprot.protein.names.new | Man page |
| uniprot.protein.swissprot.index | Man page |
| use.reference.annotation.gff | Man page |
| validate.in.database.boolean | Man page |
| write.dna.seq.by.reference.genome | Man page |
| write.dna.sequence.reference | Man page Source code |
