Files in tapj/AlimIntest
AlimIntest project source code
.RData
.Rbuildignore
.Rhistory
.gitattributes
.gitignore
DESCRIPTION
NAMESPACE
R/.Rhistory
R/AlimIntest-package.r
R/alimintest_data.r
R/mclapply.hack.R
README.md
data-raw/Alimintest_metadata.xlsx
data-raw/README.md
data-raw/SubCatKegg.csv
data-raw/SubCatKegg_good.csv
data-raw/alimintest_raw.r
data-raw/cDNA.csv
data-raw/cogenics_vs_genoscreen.classifier.total
data-raw/command_publi_june2015.r
data-raw/create_basal_diet.r
data-raw/create_global_metatrans_set.r
data-raw/create_metatrans_data.r
data-raw/diet_basal_alimintest.csv
data-raw/diet_controlled_alimintest.csv
data-raw/metadata.csv
data-raw/metadata_basal_qpcr.csv
data-raw/metatrans_16S.csv
data-raw/metatrans_metadata.csv
data-raw/metatrans_taxonomy.csv
data-raw/metatranscriptomic_associated_data.xlsx
data-raw/otu.csv
data-raw/pta_old.RData
data-raw/replicat.454.csv
data-raw/sanger.454.csv
data-raw/sanger_vs_454.classifier.total
data-raw/sequences_files_location.csv
data-raw/tax.csv
data/alimintestData.RData
data/basal_diet.RData
data/metatrans_alimintest.RData
data/replicat_454.RData
data/sanger_454.RData
figures/Tap_FigS4_metatrans_kegg.pdf
figures/Tap_FigS6_metatrans_16S_kegg_pta_coia.pdf
inst/doc/AlimIntest_analysis.R
inst/doc/AlimIntest_analysis.Rmd
inst/doc/AlimIntest_analysis.html
inst/doc/basal_diet.R
inst/doc/basal_diet.Rmd
inst/doc/basal_diet.html
inst/doc/metatranscriptomics.R
inst/doc/metatranscriptomics.Rmd
inst/doc/metatranscriptomics.html
man/AlimIntest.Rd
man/alimintestData.Rd
man/basal_diet.Rd
man/calculate_delta.Rd
man/metatrans_alimintest.Rd
man/replicat_454.Rd
man/sanger_454.Rd
vignettes/AlimIntest_analysis.Rmd
vignettes/AlimIntest_analysis.Rmd.back
vignettes/basal_diet.Rmd
vignettes/figures/Tap_FigS4_metatrans_kegg.pdf
vignettes/figures/Tap_FigS6_metatrans_16S_kegg_pta_coia.pdf
vignettes/metatranscriptomics.Rmd
vignettes/pictures/FigS1.png
