show_enteromap: Map Enterococcus results by month, year, and location
In tbep-tech/tbeptools: Data and Indicators for the Tampa Bay Estuary Program

show_enteromap

R Documentation

Map Enterococcus results by month, year, and location

Description

Map Enterococcus results by month, year, and location

Usage

show_enteromap(
  fibdata,
  yrsel,
  mosel,
  areasel = NULL,
  wetdry = FALSE,
  precipdata = NULL,
  temporal_window = NULL,
  wet_threshold = NULL,
  addsta = FALSE
)

Arguments

`fibdata`	data frame of Enterococcus sample data as returned by `enterodata` or `anlz_fibwetdry`
`yrsel`	optional numeric to filter data by year
`mosel`	optional numeric to filter data by month
`areasel`	optional character string to filter output by stations in the `long_name` column of `enterodata`, see details
`wetdry`	logical; if `TRUE`, incorporate wet/dry differences (this will result in a call to `anlz_fibwetdry`, in which case `temporal_window` and `wet_threshold` are required). If `FALSE` (default), do not differentiate between wet and dry samples.
`precipdata`	input data frame as returned by `read_importrain`. columns should be: station, date (yyyy-mm-dd), rain (in inches). The object `catchprecip` has this data from 1995-2023 for select Enterococcus stations. If `NULL`, defaults to `catchprecip`.
`temporal_window`	numeric; required if `wetdry` is `TRUE`. number of days precipitation should be summed over (1 = day of sample only; 2 = day of sample + day before; etc.)
`wet_threshold`	numeric; required if `wetdry` is `TRUE`. inches accumulated through the defined temporal window, above which a sample should be defined as being from a 'wet' time period
`addsta`	logical to add station labels to the map, default `FALSE`

Details

Placing the mouse cursor over an item on the map will reveal additional information about a station.

Value

A leaflet map for the selected year, month, and area showing stations and FIB concentration category

Examples

show_enteromap(enterodata, yrsel = 2020, mosel = 9)

# wet/dry samples
show_enteromap(enterodata, yrsel = 2020, mosel = 9, wetdry = TRUE,
               temporal_window = 2, wet_threshold = 0.5)

# Old Tampa Bay only
show_enteromap(enterodata, yrsel = 2020, mosel = 9, areasel = "Old Tampa Bay")

tbep-tech/tbeptools documentation built on April 13, 2025, 4:50 p.m.