show_transectsum: Plot frequency occurrence for a seagrass transect by time for...

In tbep-tech/tbeptools: Data and Indicators for the Tampa Bay Estuary Program

Plot frequency occurrence for a seagrass transect by time for all species

Description

Plot frequency occurrence for a seagrass transect by time for all species

Usage

show_transectsum(
  transectocc,
  site,
  species = c("Halodule", "Syringodium", "Thalassia", "Halophila", "Ruppia", "Caulerpa",
    "Dapis", "Chaetomorpha"),
  yrrng = c(1998, 2024),
  abund = FALSE,
  sppcol = NULL
)

Arguments

transectocc	data frame returned by anlz_transectocc
site	chr string indicating site results to plot
species	chr string indicating which species to plot
yrrng	numeric indicating year ranges to evaluate
abund	logical indicating if abundance averages are plotted instead of frequency occurrence
sppcol	character vector of alternative colors to use for each species, must have length of six

Details

This plot provides a quick visual assessment of how frequency occurrence or abundance for multiple species has changed over time at a selected transect. Drift or attached macroalgae (e.g., Caulerpa, Chaetomorpha) and cyanobacteria (Dapis) estimates may not be accurate prior to 2021.

Value

A plotly object

Examples

## Not run: 
transect <- read_transect()

## End(Not run)
transectocc <- anlz_transectocc(transect)
show_transectsum(transectocc, site = 'S3T10')

tbep-tech/tbeptools documentation built on April 13, 2025, 4:50 p.m.