tbniref: Reference conditions for Tampa Bay Nekton Index metrics

In tbep-tech/tbeptools: Data and Indicators for the Tampa Bay Estuary Program

Reference conditions for Tampa Bay Nekton Index metrics

Description

Reference conditions for Tampa Bay Nekton Index metrics

Usage

tbniref

Format

A data frame with 16 rows and 12 variables:

bay_segment

chr

Season

chr

NumTaxa_P5

num

NumTaxa_P95

num

BenthicTaxa_P5

num

BenthicTaxa_P95

num

TaxaSelect_P5

num

TaxaSelect_P95

num

NumGuilds_P5

num

NumGuilds_P95

num

Shannon_P5

num

Shannon_P95

num

Examples

## Not run: 

library(tbeptools)

tbniref <- anlz_tbnimet(fimdata) %>%
  dplyr::filter(between(Year, 1998, 2015)) %>%
  dplyr::select(Season, bay_segment, NumTaxa, BenthicTaxa, TaxaSelect, NumGuilds, Shannon) %>%
  dplyr::group_by(bay_segment, Season) %>%
  dplyr::summarize(NumTaxa_P5 = round(quantile(NumTaxa, probs = 0.05)),
                   NumTaxa_P95 = round(quantile(NumTaxa, probs = 0.95)),
                   BenthicTaxa_P5 = round(quantile(BenthicTaxa, probs = 0.05)),
                   BenthicTaxa_P95 = round(quantile(BenthicTaxa, probs = 0.95)),
                   TaxaSelect_P5 = round(quantile(TaxaSelect, probs = 0.05)),
                   TaxaSelect_P95 = round(quantile(TaxaSelect, probs = 0.95)),
                   NumGuilds_P5 = round(quantile(NumGuilds, probs = 0.05)),
                   NumGuilds_P95 = round(quantile(NumGuilds, probs = 0.95)),
                   Shannon_P5 = quantile(Shannon, probs = 0.05),
                   Shannon_P95 = quantile(Shannon, probs = 0.95))

save(tbniref, file = 'data/tbniref.RData', compress = 'xz')


## End(Not run)

tbep-tech/tbeptools documentation built on April 13, 2025, 4:50 p.m.