Man pages for tbilab/meToolkit
Build and Customize Phewas Multimorbidity Explorer Apps.
| build_me_dashboard | Run main ME dashboard interface from supplied data |
| build_me_w_loader | Run a ME app with data loading screen |
| calc_pattern_risk_ratio | Calculate risk ratio confidence interval |
| check_genome_file | Checks genome input dataframe for correct form |
| check_phenome_file | Check uploaded phenome file for correctness |
| check_phewas_file | Check uploaded phewas file for correctness |
| data_loader | Data loading screen: Server |
| data_loader_UI | Data loading screen: UI |
| embed_snp_codes_in_url | Embed snp id and selected codes in app URL |
| extract_snp_codes_from_url | Extract SNP and Codes from URL query string |
| extract_snp_codes_from_url_string | Extract SNP and Codes from raw URL query string |
| help_modal | Help Modal Server |
| help_modal_UI | Help Modal UI |
| info_panel | SNP info panel: Server |
| info_panel_UI | SNP info panel: UI |
| main_dashboard | Main Multimorbidity Explorer Dashboard: Server |
| main_dashboard_UI | Main Multimorbidity Explorer Dashboard: UI |
| manhattan_plot_and_table | Interactive manhattan plot and table: Server |
| manhattan_plot_and_table_UI | Interactive manhattan plot and table: UI |
| network_plot | Subject-level network diagram: Server |
| network_plot_UI | Subject-level network diagram: UI |
| normalize_phecodes | Normalize a phecode vector to padded character |
| pipe | Pipe operator |
| reconcile_data | Combine and reconcile the three main data components needed... |
| setup_network_data | Convert phenotype dataframe to a data list that works with... |
| sim_individual_data | Generate sample individual level data based upon a PheWAS... |
| sim_phewas_results | Simulate PheWAS results |
| subset_to_codes | Subset phenotype data to a given list of phecodes |
| upset | Upset plot of multimorbidity patterns: Server |
| upset_UI | Upset plot of multimorbidity patterns: UI |
