Man pages for tbilab/meToolkit

buildColorPaletteBuild Color Palette Takes a dataframe and a column to build a...
calcRrCiCalculate a risk ratio confidence interval given a pattern...
checkGenomeFileChecks genome input dataframe for correct form
checkPhenomeFileCheck uploaded phenome file for correctness
checkPhewasFileCheck uploaded phewas file for correctness
chooseSelectedCodesChoose selected phecodes for app Takes a selection dataframe...
codeFilterFilter codes.
deleteCodesDelete Phecodes from a selected phecodes list with warning.
getSNPInfoGrab snp info from NCBI database Grabs basic info on a snp...
helloHello, World!
infoPanelServer function of snp info panel
infoPanel_UISNP information panel module
invertCodesInvert currently selected codes Only inverts codes that were...
isolateCodesIsolate currently viewed codes
makeDescriptionPaletteCreate Description Color Palette
makeNetworkDataConvert phenotype dataframe to a data list that works with...
makeTooltipsCreate a tooltip column for a phewas results dataframe.
mergePhenomeGenomeMerge a tidy phenome dataframe with a tidy genome(single snp)...
mergePhenomeSnpMerge a wide phenome file and a tidy snp file by IID and...
normalizePhecodeNormalize a phecode vector to padded character Across ME we...
pipePipe operator
subsetToCodesSubset phenotype data to a given list of phecodes Removes...
upsetUpset Server Function
upset_UIUpset UI function
warnAboutSelectionWarn user about bad selection
tbilab/meToolkit documentation built on Jan. 11, 2019, 5:36 p.m.