main_dashboard: Main Multimorbidity Explorer Dashboard: Server

In tbilab/meToolkit: Build and Customize Phewas Multimorbidity Explorer Apps.

Description

Generates a full dashboard page containing various visualizations for investigating comobidity patterns in individual level data and how they relate to the results of a phewas analysis.

Usage

main_dashboard(
  input,
  output,
  session,
  snp_name,
  phewas_results,
  individual_data,
  max_allowed_codes = 40,
  usage_instructions = "default",
  colors = list(light_grey = "#f7f7f7", med_grey = "#d9d9d9", light_blue = "#4292c6",
    green = "#74c476"),
  snp_colors,
  debug_mode = FALSE,
  show_back_button_messenger = NULL
)

Arguments

input, output, session	Auto-filled by callModule | ignore
snp_name	Character string containing the RSID of the snp you're viewing. Used to find annotation information.
phewas_results	Dataframe containing the results of the phewas study. Needs columns p_val, id, category(along with accompanying color), tooltip.
individual_data	Dataframe containing columns on IID, snp(# copies of allele), and columns for each code included.
max_allowed_codes	How many codes can the app show at any given time. Defaults to 40. (Too many and app may get slow.)
usage_instructions	HTML tags corresponding to static content to be displayed in bottom half of info panel. Any html content works. Defaults to light description.
colors	A list of CSS-valid colors to paint interface in if custom colors desired. Needs light_grey, med_grey, light_blue, light_blue, green.
snp_colors	Array of valid css color codes for 0, 1, and 2 copies of the minor allele in network plot.
debug_mode	Boolean controlling if changes in app state should be recorded in logs. Defaults to off.

Value

Shiny module of main Multimorbidity Explorer dashboard

See Also

main_dashboard_UI

Examples

callModule(
  main_dashboard, 'main_dashboard',
  my_phewas_results,
  my_individual_data,
  usage_instructions = 'This app is complicated!'
)

tbilab/meToolkit documentation built on June 23, 2020, 9:55 a.m.