Running: Running analysis pipeline

In tchen-tt/SingleCell: Tools for Single Cell Genomics

Running analysis pipeline

Description

Running analysis pipeline

Usage

Running(
  object,
  variable.features.n = 3000,
  return.only.var.genes = TRUE,
  dims = 1:10,
  resolution = 0.8,
  verbose = TRUE,
  ...
)

## S4 method for signature 'Seurat'
Running(
  object,
  variable.features.n = 3000,
  return.only.var.genes = TRUE,
  dims = 1:10,
  resolution = 0.8,
  verbose = TRUE,
  ...
)

Arguments

object	An object
variable.features.n	Use this many features as variable features after ranking by residual variance; default is 3000
return.only.var.genes	If set to TRUE the scale.data matrices in output assay are subset to contain only the variable genes; default is TRUE
dims	Which dimensions to use as input features, used only if features is NULL; defalut is 1:10
verbose	Controls verbosity; default is TRUE
...	Arguments passed to other methods

tchen-tt/SingleCell documentation built on April 22, 2023, 1:50 p.m.