vervet: Vervet monkey intestinal microbiome
In tdhock/animint2: Animated Interactive Grammar of Graphics
vervet R Documentation
Vervet monkey intestinal microbiome
Description
DNA sequences (55mers) of bacteria in the gastrointestinal tract of 23
vervet (African green) monkeys from Wake Forest University Primate
Center Vervet Research Colony. Some monkeys were measured in several
locations, so there are a total of 64 samples. The goal in analyzing
these data was to determine whether or not similar bacteria are detected
in nearby locations, assuming that each 55mer uniquely identifies a
bacterium.
Usage
data(vervet)
Format
The format is a named list of data.frames: samples contains 64 rows
with sample-specific info, counts contains 1190208 rows with counts of
55mers observed in each sample, and monkeys contains 23 rows with
monkey-specific information.
Source
DNA sequencing was funded by Genome Quebec and generated at the McGill
Innovation Center. More info about the Vervet Microbiome project
http://www.genomequebec.mcgill.ca/compgen/vervet_research/
http://genome.wustl.edu/projects/detail/vervet-microbiome/
tdhock/animint2 documentation built on April 14, 2024, 4:22 p.m.
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| vervet | R Documentation |
Vervet monkey intestinal microbiome
Description
DNA sequences (55mers) of bacteria in the gastrointestinal tract of 23 vervet (African green) monkeys from Wake Forest University Primate Center Vervet Research Colony. Some monkeys were measured in several locations, so there are a total of 64 samples. The goal in analyzing these data was to determine whether or not similar bacteria are detected in nearby locations, assuming that each 55mer uniquely identifies a bacterium.
Usage
data(vervet)Format
The format is a named list of data.frames: samples contains 64 rows with sample-specific info, counts contains 1190208 rows with counts of 55mers observed in each sample, and monkeys contains 23 rows with monkey-specific information.
Source
DNA sequencing was funded by Genome Quebec and generated at the McGill Innovation Center. More info about the Vervet Microbiome project http://www.genomequebec.mcgill.ca/compgen/vervet_research/ http://genome.wustl.edu/projects/detail/vervet-microbiome/
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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