attribute_graph: Generate attribute specific co-occurance networks.

In tdrose/mosbi: Molecular Signature identification using Biclustering

Generate attribute specific co-occurance networks.

Description

The function generates co-occurance networks for all the attributes. E.g. if MARGIN="column", for each column, a oc-occurance matrix of rows is generated, which includes all biclusters, where the column element is present.

Usage

attribute_graph(bics, m, MARGIN = "column")

Arguments

bics	A list of biclusters.
m	The matrix used for biclustering.
MARGIN	"row" or "row", Indicating if a list of row- or column-specific networks is generated

Value

A list of numeric matrices. If MARGIN="column" ("row"), the list has a length of ncol(m) (nrow(m)) and each matrix the dimensions of c(nrow(m), nrow(m)) (c(ncol(m), ncol(m)))

Examples

m <- matrix(seq(1:16), nrow=4)
# m <- matrix(rnorm(10000), nrow=100)
# bics <- c(run_fabia(m), run_isa(m), run_plaid(m))
# attribute_graph(bics, m)

tdrose/mosbi documentation built on May 4, 2022, 3:22 p.m.