Files in tdrose/mosbi
Molecular Signature identification using Biclustering
.BBSoptions
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/RcppExports.R
R/bicluster.R
R/bicluster_net_methods.R
R/ensemble_bicluster.R
R/extract_BicARE.R
R/extract_akmbiclust.R
R/extract_biclust.R
R/extract_biclustpy.R
R/extract_fabia.R
R/extract_isa.R
R/feature_louvain_overlap.R
R/filter_biclusters.R
R/get_biclusters.R
R/misc.R
R/mosbi-package.R
R/mouse_data.R
R/pipeline.R
R/run_algorithms.R
README.md
data/mouse_data.RData
inst/CITATION
man/NoBFBiclusters.Rd
man/algohistogram.Rd
man/apply_threshold-bicluster_net-method.Rd
man/apply_threshold-cooccurrence_net-method.Rd
man/apply_threshold.Rd
man/attr_overlap.Rd
man/attributeConnector.Rd
man/attribute_graph.Rd
man/bicluster-class.Rd
man/bicluster_heatmap-bicluster-matrix-method.Rd
man/bicluster_heatmap.Rd
man/bicluster_net-class.Rd
man/bicluster_net_to_igraph-bicluster_net-method.Rd
man/bicluster_net_to_igraph.Rd
man/bicluster_network.Rd
man/bicluster_to_matrix-matrix-bicluster-method.Rd
man/bicluster_to_matrix.Rd
man/check_names.Rd
man/clean_bicluster_list.Rd
man/colhistogram.Rd
man/cooccurrence_net-class.Rd
man/cooccurrence_net_to_igraph-cooccurrence_net-method.Rd
man/cooccurrence_net_to_igraph.Rd
man/cpp_matrix_subsetting.Rd
man/detect_elements.Rd
man/dim-bicluster-method.Rd
man/distance_matrix.Rd
man/ensemble_biclusters.Rd
man/feature_louvain_overlap.Rd
man/feature_network.Rd
man/filter_bicluster_size.Rd
man/filter_biclusters.Rd
man/filter_matrix.Rd
man/filter_subsets.Rd
man/full_graph.Rd
man/getAkmbiclustClusters.Rd
man/getBFCluster.Rd
man/getBicAREbiclusters.Rd
man/getBiclustClusters.Rd
man/getBiclustpyClusters.Rd
man/getFabiaClusters.Rd
man/getIsaClusters.Rd
man/getQUBIC2biclusters.Rd
man/get_adjacency-bicluster_net-method.Rd
man/get_adjacency.Rd
man/get_algorithms.Rd
man/get_bic_net_algorithms-bicluster_net-method.Rd
man/get_bic_net_algorithms.Rd
man/get_biclusters.Rd
man/get_louvain_communities-bicluster_net-method.Rd
man/get_louvain_communities-cooccurrence_net-method.Rd
man/get_louvain_communities.Rd
man/getallBFClusters.Rd
man/has_names.Rd
man/is_subset_or_identical.Rd
man/mouse_data.Rd
man/network_edge_strength.Rd
man/network_edge_strength_float.Rd
man/node_size.Rd
man/occurance_matrix.Rd
man/occurance_table.Rd
man/p_overlap.Rd
man/p_overlap_2d.Rd
man/p_overlap_2d_higher.Rd
man/p_overlap_higher.Rd
man/plot-bicluster_net-missing-method.Rd
man/plot-cooccurrence_net-missing-method.Rd
man/plot_algo_network.Rd
man/plot_piechart_bicluster_network.Rd
man/randomize_matrix.Rd
man/replace_threshold.Rd
man/replace_values.Rd
man/replace_values_float.Rd
man/rowhistogram.Rd
man/run_akmbiclust.Rd
man/run_bimax.Rd
man/run_cc.Rd
man/run_fabia.Rd
man/run_isa.Rd
man/run_plaid.Rd
man/run_qubic.Rd
man/run_quest.Rd
man/run_spectral.Rd
man/run_unibic.Rd
man/run_xmotifs.Rd
man/sample_biclusters.Rd
man/select_biclusters_from_bicluster_network-bicluster_net-list-method.Rd
man/select_biclusters_from_bicluster_network.Rd
man/set_bicluster_names-bicluster-matrix-method.Rd
man/set_bicluster_names.Rd
man/similarity_matrix.Rd
man/transpose_bicluster.Rd
man/validate_bicluster.Rd
man/write_graphml.Rd
man/write_matrix.Rd
man/zero_subsetting.Rd
src/.gitignore
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/attr_graph.cpp
src/attributeConnector.cpp
src/attribute_overlap.cpp
src/bicluster_methods.cpp
src/boost_graph.cpp
src/boost_graph.h
src/boost_types.h
src/boost_write.cpp
src/boost_write.h
src/distance_matrix.cpp
src/distance_matrix.h
src/extractBF.cpp
src/extractQUBIC2.cpp
src/full_graph.cpp
src/misc.cpp
src/network_edge_strength.cpp
src/sample_biclusters.cpp
src/sample_biclusters.h
src/write_matrix.cpp
tests/testthat.R
tests/testthat/test_bicluster_net.R
tests/testthat/test_cpp_methods.R
tests/testthat/test_prob.R
tests/testthat/test_similarity.R
vignettes/.gitignore
vignettes/example-workflow.Rmd
vignettes/similarity-metrics-evaluation.Rmd
