run_quest: Run the Quest biclustering algorithm

View source: R/run_algorithms.R

run_questR Documentation

Run the Quest biclustering algorithm

Description

The function executes the BCQuest biclustering algorithm, returning a list of biclusters converted into bicluster objects compatible with this package. If the algorithm fails to run, an empty list is returned.

Usage

run_quest(data_matrix, minRow = 2, minCol = 2, ...)

Arguments

data_matrix

A numeric matrix.

minRow

Same parameters as in filter_bicluster_size.

minCol

Same parameters as in filter_bicluster_size.

...

Other parameters forwarded to the BCQuest function.

Value

a list of bicluster objects.

Examples

m <- matrix(seq(1:16), nrow=4)
# m <- matrix(rnorm(10000), nrow=100)
# run_quest(m)


tdrose/mosbi documentation built on May 4, 2022, 3:22 p.m.