run_quest: Run the Quest biclustering algorithm

In tdrose/mosbi: Molecular Signature identification using Biclustering

Run the Quest biclustering algorithm

Description

The function executes the BCQuest biclustering algorithm, returning a list of biclusters converted into bicluster objects compatible with this package. If the algorithm fails to run, an empty list is returned.

Usage

run_quest(data_matrix, minRow = 2, minCol = 2, ...)

Arguments

data_matrix	A numeric matrix.
minRow	Same parameters as in filter_bicluster_size.
minCol	Same parameters as in filter_bicluster_size.
...	Other parameters forwarded to the BCQuest function.

Value

a list of bicluster objects.

Examples

m <- matrix(seq(1:16), nrow=4)
# m <- matrix(rnorm(10000), nrow=100)
# run_quest(m)

tdrose/mosbi documentation built on May 4, 2022, 3:22 p.m.