select_biclusters_from_bicluster_network-bicluster_net-list-method: Create a subset of biclusters based on a bicluster network

In tdrose/mosbi: Molecular Signature identification using Biclustering

Create a subset of biclusters based on a bicluster network

Description

The function returns an adapted bicluster list based on a bicluster_net object. This might be necessary e.g. after get_louvain_communities was used and a community consists only of a subset of the biclusters.

Usage

## S4 method for signature 'bicluster_net,list'
select_biclusters_from_bicluster_network(bic_net, bics)

Arguments

bic_net	A bicluster_net.
bics	A list of bicluster objects as returned by get_biclusters.

Value

A subsetted list of bicluster objects.

Examples

m <- matrix(seq(1:16), nrow=4)
# m <- matrix(rnorm(10000), nrow=100)
# bics <- c(run_fabia(m), run_isa(m), run_plaid(m))
# bn <- bicluster_network(bics, m)
# lc <- get_louvain_communities(bn)
# select_biclusters_from_bicluster_network(lc[[1]], bics)

tdrose/mosbi documentation built on May 4, 2022, 3:22 p.m.