run_fabia: Run the fabia biclustering algorithm

In tdrose/mosbi: Molecular Signature identification using Biclustering

Run the fabia biclustering algorithm

Description

The function executes the fabia biclustering algorithm, returning a list of biclusters converted into bicluster objects compatible with this package. If the algorithm fails to run, an empty list is returned.

Usage

run_fabia(
  data_matrix,
  minRow = 2,
  minCol = 2,
  thresZ = 0.5,
  thresL = NULL,
  ...
)

Arguments

data_matrix	A numeric matrix.
minRow	Same parameters as in filter_bicluster_size.
minCol	Same parameters as in filter_bicluster_size.
thresZ	See parameter from the extractBic function.
thresL	See parameter from the extractBic function.
...	Other parameters forwarded to the fabia function.

Value

a list of bicluster objects.

Examples

m <- matrix(seq(1:16), nrow=4)
# m <- matrix(rnorm(1000), nrow=10)
# run_fabia(m, p=5)

tdrose/mosbi documentation built on May 4, 2022, 3:22 p.m.