plot_piechart_bicluster_network: Plot a bicluster network with piecharts as nodes.

In tdrose/mosbi: Molecular Signature identification using Biclustering

Plot a bicluster network with piecharts as nodes.

Description

Plot a bicluster network with piecharts as nodes.

Usage

plot_piechart_bicluster_network(
  bic_net,
  bics,
  class_vector,
  colors,
  named = TRUE,
  MARGIN = "column",
  new_layout = TRUE,
  ...
)

Arguments

bic_net	A bicluster_net object.
bics	The corresponding list of biclusters from bic_net. After calculating communities with get_louvain_communities it is necessary to get the subset of biclusters using select_biclusters_from_bicluster_network.
class_vector	A (named) vector with class affinities. Every occuring element in the biclustes must have a non NA value in this list.
colors	Colors used for the classes. Must be a vector with colors in the order of sort(unique(class_vector)).
named	Indicates if rowname/colname of the bicluster objects should be used instead of the indizes.
MARGIN	Must be "row" or "column". Indicates which dimension of the bicluster should be used for coloring.
new_layout	If FALSE, the plot accepts a network layout as a parameter, other wise a new layout is computed.
...	Additional parameters forwarded to plot.igraph.

Value

If new_layout, a new network layout is returned that can be used for other plots.

Examples

m <- matrix(seq(1:16), nrow=4)
# m <- matrix(rnorm(10000), nrow=100)
# bics <- c(run_fabia(m), run_isa(m), run_plaid(m))
# bn <- bicluster_network(bics, m)
# groups <- ifelse(runif(100)< 0.5, "group1", "group2")
# cols <- c("group1"="blue", "group2"="grey")
# plot_piechart_bicluster_network(bn, bics, groups, cols, named=FALSE)

tdrose/mosbi documentation built on May 4, 2022, 3:22 p.m.