Files in tece-lab/DAISIEutils
Utility Functions for the DAISIE Package
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/test-coverage.yaml
.gitignore
.zenodo.json
DAISIEutils.Rproj
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/DAISIEutils-package.R
R/bootstrap.R
R/bootstrap_lr.R
R/calc_bic.R
R/calc_loglik_ratio.R
R/calc_p_value.R
R/calc_power.R
R/calc_sim_metrics.R
R/check_rep_seeds.R
R/check_rep_seeds_depr.R
R/choose_best_model.R
R/create_output_folder.R
R/create_results_dir.R
R/data.R
R/default_params_doc.R
R/get_available_models.R
R/is_on_cluster.R
R/plot_goodness_of_fit.R
R/plot_sim_metrics.R
R/print_metadata.R
R/read_model_results.R
R/run_daisie_2type_ml.R
R/run_daisie_ml.R
R/run_sim.R
R/sensitivity.R
R/setup_2type_model.R
R/setup_model.R
R/setup_std_pars2.R
README.md
_pkgdown.yml
bash/install_DAISIEutils.sh
bash/submit_bootstrap.sh
bash/submit_bootstrap_lr.sh
bash/submit_run_daisie_2type_ml.sh
bash/submit_run_daisie_2type_ml_long.sh
bash/submit_run_daisie_ml.sh
bash/submit_run_daisie_ml_long.sh
bash/submit_upload_results.sh
data-raw/azores_reference_data.R
data/Azores.rda
data/Azores_alt_m.rda
man/Azores.Rd
man/Azores_alt_m.Rd
man/DAISIEutils-package.Rd
man/bootstrap.Rd
man/bootstrap_lr.Rd
man/calc_bic.Rd
man/calc_loglik_ratio.Rd
man/calc_p_value.Rd
man/calc_power.Rd
man/calc_sim_metrics.Rd
man/check_rep_seeds.Rd
man/check_rep_seeds_depr.Rd
man/choose_best_model.Rd
man/create_output_folder.Rd
man/create_results_dir_path.Rd
man/default_params_doc.Rd
man/get_available_models.Rd
man/is_on_cluster.Rd
man/plot_bootstrap_results.Rd
man/plot_sim_metrics.Rd
man/print_metadata.Rd
man/read_model_results.Rd
man/run_daisie_2type_ml.Rd
man/run_daisie_ml.Rd
man/run_sim.Rd
man/sensitivity.Rd
man/setup_2type_model.Rd
man/setup_model.Rd
man/setup_std_pars2.Rd
man/summarize_bootstrap_results.Rd
scripts/bootstrap.R
scripts/bootstrap_lr.R
scripts/run_daisie_2type_ml.R
scripts/run_daisie_ml.R
scripts/upload_results.R
tests/testthat.R
tests/testthat/test-bootstrap.R
tests/testthat/test-bootstrap_lr.R
tests/testthat/test-calc_bic.R
tests/testthat/test-calc_loglik_ratio.R
tests/testthat/test-calc_p_value.R
tests/testthat/test-calc_power.R
tests/testthat/test-check_rep_seeds.R
tests/testthat/test-check_rep_seeds_depr.R
tests/testthat/test-create_output_folder.R
tests/testthat/test-create_results_dir.R
tests/testthat/test-get_available_models.R
tests/testthat/test-is_on_cluster.R
tests/testthat/test-package_style.R
tests/testthat/test-print_metadata.R
tests/testthat/test-read_model_results.R
tests/testthat/test-run_daisie_2type_ml.R
tests/testthat/test-run_daisie_ml.R
tests/testthat/test-run_sim.R
tests/testthat/test-sensitivity.R
tests/testthat/test-setup_2type_model.R
tests/testthat/test-setup_model.R
tests/testthat/testdata/Azores_Azores_alt_m.rds
tests/testthat/testdata/results/Azores/Azores_boot_cr_dd_1.rds
tests/testthat/testdata/results/Azores/Azores_boot_cr_dd_2.rds
tests/testthat/testdata/results/Azores/Azores_boot_cr_dd_3.rds
tests/testthat/testdata/results/Azores/Azores_boot_cr_dd_4.rds
tests/testthat/testdata/results/Azores/Azores_boot_cr_dd_5.rds
tests/testthat/testdata/results/Azores/Azores_boot_lr_cr_dd_cr_di_1.rds
tests/testthat/testdata/results/Azores/Azores_boot_lr_cr_dd_cr_di_2.rds
tests/testthat/testdata/results/Azores/Azores_boot_lr_cr_dd_cr_di_3.rds
tests/testthat/testdata/results/Azores/Azores_boot_lr_cr_dd_cr_di_4.rds
tests/testthat/testdata/results/Azores/Azores_boot_lr_cr_dd_cr_di_5.rds
tests/testthat/testdata/results/Azores/Azores_cr_dd_1.rds
tests/testthat/testdata/results/Azores/Azores_cr_dd_2.rds
tests/testthat/testdata/results/Azores/Azores_cr_dd_3.rds
tests/testthat/testdata/results/Azores/Azores_cr_dd_4.rds
tests/testthat/testdata/results/Azores/Azores_cr_dd_5.rds
tests/testthat/testdata/results/Azores/Azores_cr_di_1.rds
tests/testthat/testdata/results/Azores/Azores_cr_di_2.rds
tests/testthat/testdata/results/Azores/Azores_cr_di_3.rds
tests/testthat/testdata/results/Azores/Azores_cr_di_4.rds
tests/testthat/testdata/results/Azores/Azores_cr_di_5.rds
tests/testthat/testdata/results/Azores_alt_m/Azores_alt_m_cr_dd_1.rds
tests/testthat/testdata/results/Azores_alt_m/Azores_alt_m_cr_dd_2.rds
tests/testthat/testdata/results/Azores_alt_m/Azores_alt_m_cr_dd_3.rds
tests/testthat/testdata/results/Azores_alt_m/Azores_alt_m_cr_dd_4.rds
tests/testthat/testdata/results/Azores_alt_m/Azores_alt_m_cr_dd_5.rds
tests/testthat/testdata/results/Azores_alt_m/Azores_alt_m_cr_di_1.rds
tests/testthat/testdata/results/Azores_alt_m/Azores_alt_m_cr_di_2.rds
tests/testthat/testdata/results/Azores_alt_m/Azores_alt_m_cr_di_3.rds
tests/testthat/testdata/results/Azores_alt_m/Azores_alt_m_cr_di_4.rds
tests/testthat/testdata/results/Azores_alt_m/Azores_alt_m_cr_di_5.rds
tests/testthat/testdata/testlogs/dups/current/current_logs-array-6.log
tests/testthat/testdata/testlogs/dups/current/current_logs-array-7.log
tests/testthat/testdata/testlogs/dups/current/current_logs-array-8.log
tests/testthat/testdata/testlogs/dups/current/current_logs-array-9.log
tests/testthat/testdata/testlogs/dups/deprecated/old_logs-array-1.log
tests/testthat/testdata/testlogs/dups/deprecated/old_logs-array-2.log
tests/testthat/testdata/testlogs/dups/deprecated/old_logs-array-3.log
tests/testthat/testdata/testlogs/dups/deprecated/old_logs-array-4.log
tests/testthat/testdata/testlogs/no_dups/current/current_logs-array-6.log
tests/testthat/testdata/testlogs/no_dups/current/current_logs-array-7.log
tests/testthat/testdata/testlogs/no_dups/current/current_logs-array-8.log
tests/testthat/testdata/testlogs/no_dups/deprecated/old_logs-array-1.log
tests/testthat/testdata/testlogs/no_dups/deprecated/old_logs-array-2.log
tests/testthat/testdata/testlogs/no_dups/deprecated/old_logs-array-3.log
