summarize_bootstrap_results: Computes summary results of bootstrap simulations useful for...

In tece-lab/DAISIEutils: Utility Functions for the DAISIE Package

Computes summary results of bootstrap simulations useful for plotting

Description

The output is a list of results

Usage

summarize_bootstrap_results(daisie_data, mainland_n = 1000)

Arguments

daisie_data	A list, conforming to the DAISIE object format. Usually preprocessed by DAISIE::DAISIE_dataprep(), see it's documentation for details. Otherwise it may be generated via simulations, using DAISIE::DAISIE_sim_cr() and friends.
mainland_n	A numeric stating the number of mainland species, that is the number of species that can potentially colonize the island. If using a clade-specific diversity dependence, this value is set to 1 internally in the simulation. If using an island-wide diversity dependence, this value is set to the number of mainland species.

Value

overall_results a list of results

Author(s)

Rampal S. Etienne & Luis Valente

Examples

## Not run: 
clado_rate <- 0.5
ext_rate <- 0.2
carr_cap <- Inf
immig_rate <- 0.005
ana_rate <- 1
sim_pars <- c(clado_rate, ext_rate, carr_cap, immig_rate, ana_rate)
set.seed(1)

dataset_cs <- DAISIE::DAISIE_sim_cr(
  time = 10,
  M = 1000,
  pars = sim_pars,
  replicates = 10,
  plot_sims = FALSE,
  verbose = FALSE,
  divdepmodel = "CS"
)

dataset_iw <- DAISIE::DAISIE_sim_cr(
  time = 10,
  M = 1000,
  pars = sim_pars,
  replicates = 10,
  plot_sims = FALSE,
  verbose = FALSE,
  divdepmodel = "IW"
)
overall_results_cs <- DAISIEutils::summarize_bootstrap_results(
  daisie_data = dataset_cs
)
overall_results_iw <- DAISIEutils::summarize_bootstrap_results(
  daisie_data = dataset_iw
)

## End(Not run)

tece-lab/DAISIEutils documentation built on Jan. 31, 2024, 12:09 p.m.