plot_bootstrap_results: Computes summary results of bootstrap simulations useful for...

In tece-lab/DAISIEutils: Utility Functions for the DAISIE Package

Computes summary results of bootstrap simulations useful for plotting

Description

The output is a list of results

Usage

plot_bootstrap_results(
  overall_results,
  sumstats = c(65, 5, 28, 1),
  ylim4 = 0.7,
  title = NULL
)

Arguments

overall_results	summary results obtained with summarize_bootstrap_results().
sumstats	vector with the number of species, number of colonization, size of the largest clade and the rank of the largest clade in the empirical data
ylim4	maximum of the plot of the rank of the largest clade.
title	title of the plot.

Author(s)

Rampal S. Etienne & Luis Valente

Examples

## Not run: 
clado_rate <- 0.5
ext_rate <- 0.2
carr_cap <- Inf
immig_rate <- 0.005
ana_rate <- 1
sim_pars <- c(clado_rate, ext_rate, carr_cap, immig_rate, ana_rate)
set.seed(1)

dataset_cs <- DAISIE::DAISIE_sim_cr(
  time = 10,
  M = 1000,
  pars = sim_pars,
  replicates = 10,
  plot_sims = FALSE,
  verbose = FALSE,
  divdepmodel = "CS"
)

dataset_iw <- DAISIE::DAISIE_sim_cr(
  time = 10,
  M = 1000,
  pars = sim_pars,
  replicates = 10,
  plot_sims = FALSE,
  verbose = FALSE,
  divdepmodel = "IW"
)
overall_results_cs <- DAISIEutils::summarize_bootstrap_results(
  daisie_data = dataset_cs
)
overall_results_iw <- DAISIEutils::summarize_bootstrap_results(
  daisie_data = dataset_iw
)
par(mfrow = c(2, 4), cex.lab = 1.5, cex.main = 1.5)
DAISIEutils::plot_bootstrap_results(
  overall_results = overall_results_cs,
  title = "Simulated under CS"
)
DAISIEutils::plot_bootstrap_results(
  overall_results = overall_results_iw,
  title = "Simulated under IW"
)

## End(Not run)

tece-lab/DAISIEutils documentation built on Jan. 31, 2024, 12:09 p.m.