Man pages for tece-lab/DAISIEutils
Utility Functions for the DAISIE Package
| Azores | Birds of Azores archipelago |
| Azores_alt_m | Birds of Azores archipelago with alternative mainland species... |
| bootstrap | Runs a bootstrapping on a DAISIE model to determine parameter... |
| bootstrap_lr | Runs a parameteric bootstrapping likelihood ratio test on two... |
| calc_bic | Compute Bayesian Information Criterion of a model |
| calc_loglik_ratio | Calculates the loglikelihood ratio between two models |
| calc_power | Calculates power to detect the true model |
| calc_p_value | Calculates p-value for rejecting a model from a distribution... |
| calc_sim_metrics | Calculates summary metrics from a simulation |
| check_rep_seeds | Checks if jobs were run with the same seed |
| check_rep_seeds_depr | Checks if jobs were run with the same seed on older logs |
| choose_best_model | From multiple seeds, choose the best model fit |
| create_output_folder | Create output folder |
| create_results_dir_path | Create results directory path |
| DAISIEutils-package | DAISIEutils: Utility Functions for the DAISIE Package |
| default_params_doc | Default parameters documentation |
| get_available_models | List all available models |
| is_on_cluster | Check if code is running on Hábrók HPCC |
| plot_bootstrap_results | Computes summary results of bootstrap simulations useful for... |
| plot_sim_metrics | Plots metrics from simulations |
| print_metadata | Print session and run info to console/log file |
| read_model_results | Reads 'run_daisie_ml()' results |
| run_daisie_2type_ml | Run 2 type DAISIE analysis |
| run_daisie_ml | Run DAISIE analysis |
| run_sim | Runs a DAISIE simulation |
| sensitivity | Read the results of 'run_daisie_ml()' and compares model... |
| setup_2type_model | Set up DAISIE_ML arguments |
| setup_model | Set up DAISIE_ML arguments |
| setup_std_pars2 | Fills pars2 vector for most common DAISIE ML CS runs |
| summarize_bootstrap_results | Computes summary results of bootstrap simulations useful for... |
