Files in ted9219/CoDImputationHeart
Cause of death imputation package
.Rbuildignore
.Rproj.user/95BC76C/cpp-definition-cache
.Rproj.user/95BC76C/pcs/debug-breakpoints.pper
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.Rproj.user/95BC76C/sources/s-260d2460/38393EC9-contents
.Rproj.user/95BC76C/sources/s-260d2460/lock_file
.Rproj.user/shared/notebooks/patch-chunk-names
.Rproj.user/shared/notebooks/paths
.gitattributes
CoDImputationHeart.Rproj
DESCRIPTION
HydraConfig.json
NAMESPACE
R/ApplyPlp.R
R/ExternalValidatePlp.R
R/Fit.R
R/PackageResults.R
R/Predict.R
R/SaveLoadPlp.R
R/SkeletonValidationPackage.R
R/StudyPopulation.R
R/causeImputation.R
R/createImputationData.R
R/evaluateMultiplePlp.R
R/helpers.R
R/main.R
README.md
extras/CodeToRun.R
extras/PackageMaintenance.R
inst/cohorts/CSKIM_Any_Visit.json
inst/cohorts/CSKIM_Any_death.json
inst/cohorts/CSKIM_Cancer_death__KOSIS.json
inst/cohorts/CSKIM_Chronic_lower_respiratory_disease_death__KOSIS.json
inst/cohorts/CSKIM_Heart_Disease_death__KOSIS.json
inst/cohorts/CSKIM_Liver_disease_death__KOSIS.json
inst/cohorts/CSKIM_Pneumonia_death__KOSIS.json
inst/cohorts/CSKIM_cerebrovascular_death__KOSIS.json
inst/cohorts/CSKIM_diabetes_death__KOSIS.json
inst/finalModels/final_model_60.rds
inst/plp_models/Analysis_1/plpResult/analysisRef.rds
inst/plp_models/Analysis_1/plpResult/covariateSummary.rds
inst/plp_models/Analysis_1/plpResult/executionSummary.rds
inst/plp_models/Analysis_1/plpResult/inputSetting.rds
inst/plp_models/Analysis_1/plpResult/model/analysisId.rds
inst/plp_models/Analysis_1/plpResult/model/attributes.rds
inst/plp_models/Analysis_1/plpResult/model/cohortId.rds
inst/plp_models/Analysis_1/plpResult/model/covariateMap.rds
inst/plp_models/Analysis_1/plpResult/model/dense.rds
inst/plp_models/Analysis_1/plpResult/model/hyperParamSearch.rds
inst/plp_models/Analysis_1/plpResult/model/index.rds
inst/plp_models/Analysis_1/plpResult/model/metaData.rds
inst/plp_models/Analysis_1/plpResult/model/model.rds
inst/plp_models/Analysis_1/plpResult/model/modelSettings.rds
inst/plp_models/Analysis_1/plpResult/model/outcomeId.rds
inst/plp_models/Analysis_1/plpResult/model/populationSettings.rds
inst/plp_models/Analysis_1/plpResult/model/trainCVAuc.rds
inst/plp_models/Analysis_1/plpResult/model/trainingTime.rds
inst/plp_models/Analysis_1/plpResult/model/transform.rds
inst/plp_models/Analysis_1/plpResult/model/varImp.rds
inst/plp_models/Analysis_1/plpResult/performanceEvaluation.rds
inst/plp_models/Analysis_1/plpResult/prediction.rds
inst/plp_models/Analysis_10/plpResult/analysisRef.rds
inst/plp_models/Analysis_10/plpResult/covariateSummary.rds
inst/plp_models/Analysis_10/plpResult/executionSummary.rds
inst/plp_models/Analysis_10/plpResult/inputSetting.rds
inst/plp_models/Analysis_10/plpResult/model/analysisId.rds
inst/plp_models/Analysis_10/plpResult/model/attributes.rds
inst/plp_models/Analysis_10/plpResult/model/cohortId.rds
inst/plp_models/Analysis_10/plpResult/model/covariateMap.rds
inst/plp_models/Analysis_10/plpResult/model/dense.rds
inst/plp_models/Analysis_10/plpResult/model/hyperParamSearch.rds
inst/plp_models/Analysis_10/plpResult/model/index.rds
inst/plp_models/Analysis_10/plpResult/model/metaData.rds
inst/plp_models/Analysis_10/plpResult/model/model
inst/plp_models/Analysis_10/plpResult/model/modelSettings.rds
inst/plp_models/Analysis_10/plpResult/model/outcomeId.rds
inst/plp_models/Analysis_10/plpResult/model/populationSettings.rds
inst/plp_models/Analysis_10/plpResult/model/trainCVAuc.rds
inst/plp_models/Analysis_10/plpResult/model/trainingTime.rds
inst/plp_models/Analysis_10/plpResult/model/transform.rds
inst/plp_models/Analysis_10/plpResult/model/varImp.rds
inst/plp_models/Analysis_10/plpResult/performanceEvaluation.rds
inst/plp_models/Analysis_10/plpResult/prediction.rds
inst/plp_models/Analysis_11/plpResult/analysisRef.rds
inst/plp_models/Analysis_11/plpResult/covariateSummary.rds
inst/plp_models/Analysis_11/plpResult/executionSummary.rds
inst/plp_models/Analysis_11/plpResult/inputSetting.rds
inst/plp_models/Analysis_11/plpResult/model/analysisId.rds
inst/plp_models/Analysis_11/plpResult/model/attributes.rds
inst/plp_models/Analysis_11/plpResult/model/cohortId.rds
inst/plp_models/Analysis_11/plpResult/model/covariateMap.rds
inst/plp_models/Analysis_11/plpResult/model/dense.rds
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inst/plp_models/Analysis_11/plpResult/model/index.rds
inst/plp_models/Analysis_11/plpResult/model/metaData.rds
inst/plp_models/Analysis_11/plpResult/model/model
inst/plp_models/Analysis_11/plpResult/model/modelSettings.rds
inst/plp_models/Analysis_11/plpResult/model/outcomeId.rds
inst/plp_models/Analysis_11/plpResult/model/populationSettings.rds
inst/plp_models/Analysis_11/plpResult/model/trainCVAuc.rds
inst/plp_models/Analysis_11/plpResult/model/trainingTime.rds
inst/plp_models/Analysis_11/plpResult/model/transform.rds
inst/plp_models/Analysis_11/plpResult/model/varImp.rds
inst/plp_models/Analysis_11/plpResult/performanceEvaluation.rds
inst/plp_models/Analysis_11/plpResult/prediction.rds
inst/plp_models/Analysis_12/plpResult/analysisRef.rds
inst/plp_models/Analysis_12/plpResult/covariateSummary.rds
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inst/plp_models/Analysis_12/plpResult/inputSetting.rds
inst/plp_models/Analysis_12/plpResult/model/analysisId.rds
inst/plp_models/Analysis_12/plpResult/model/attributes.rds
inst/plp_models/Analysis_12/plpResult/model/cohortId.rds
inst/plp_models/Analysis_12/plpResult/model/covariateMap.rds
inst/plp_models/Analysis_12/plpResult/model/dense.rds
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inst/plp_models/Analysis_12/plpResult/model/index.rds
inst/plp_models/Analysis_12/plpResult/model/metaData.rds
inst/plp_models/Analysis_12/plpResult/model/model
inst/plp_models/Analysis_12/plpResult/model/modelSettings.rds
inst/plp_models/Analysis_12/plpResult/model/outcomeId.rds
inst/plp_models/Analysis_12/plpResult/model/populationSettings.rds
inst/plp_models/Analysis_12/plpResult/model/trainCVAuc.rds
inst/plp_models/Analysis_12/plpResult/model/trainingTime.rds
inst/plp_models/Analysis_12/plpResult/model/transform.rds
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inst/plp_models/Analysis_12/plpResult/performanceEvaluation.rds
inst/plp_models/Analysis_12/plpResult/prediction.rds
inst/plp_models/Analysis_13/plpResult/analysisRef.rds
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inst/plp_models/Analysis_13/plpResult/model/model
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inst/plp_models/Analysis_13/plpResult/model/populationSettings.rds
inst/plp_models/Analysis_13/plpResult/model/trainCVAuc.rds
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inst/plp_models/Analysis_13/plpResult/prediction.rds
inst/plp_models/Analysis_14/plpResult/analysisRef.rds
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inst/plp_models/Analysis_14/plpResult/model/model
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inst/plp_models/Analysis_7/plpResult/model/model.rds
inst/plp_models/Analysis_7/plpResult/model/modelSettings.rds
inst/plp_models/Analysis_7/plpResult/model/outcomeId.rds
inst/plp_models/Analysis_7/plpResult/model/populationSettings.rds
inst/plp_models/Analysis_7/plpResult/model/trainCVAuc.rds
inst/plp_models/Analysis_7/plpResult/model/trainingTime.rds
inst/plp_models/Analysis_7/plpResult/model/transform.rds
inst/plp_models/Analysis_7/plpResult/model/varImp.rds
inst/plp_models/Analysis_7/plpResult/performanceEvaluation.rds
inst/plp_models/Analysis_7/plpResult/prediction.rds
inst/plp_models/Analysis_8/plpResult/analysisRef.rds
inst/plp_models/Analysis_8/plpResult/covariateSummary.rds
inst/plp_models/Analysis_8/plpResult/executionSummary.rds
inst/plp_models/Analysis_8/plpResult/inputSetting.rds
inst/plp_models/Analysis_8/plpResult/model/analysisId.rds
inst/plp_models/Analysis_8/plpResult/model/attributes.rds
inst/plp_models/Analysis_8/plpResult/model/cohortId.rds
inst/plp_models/Analysis_8/plpResult/model/covariateMap.rds
inst/plp_models/Analysis_8/plpResult/model/dense.rds
inst/plp_models/Analysis_8/plpResult/model/hyperParamSearch.rds
inst/plp_models/Analysis_8/plpResult/model/index.rds
inst/plp_models/Analysis_8/plpResult/model/metaData.rds
inst/plp_models/Analysis_8/plpResult/model/model.rds
inst/plp_models/Analysis_8/plpResult/model/modelSettings.rds
inst/plp_models/Analysis_8/plpResult/model/outcomeId.rds
inst/plp_models/Analysis_8/plpResult/model/populationSettings.rds
inst/plp_models/Analysis_8/plpResult/model/trainCVAuc.rds
inst/plp_models/Analysis_8/plpResult/model/trainingTime.rds
inst/plp_models/Analysis_8/plpResult/model/transform.rds
inst/plp_models/Analysis_8/plpResult/model/varImp.rds
inst/plp_models/Analysis_8/plpResult/performanceEvaluation.rds
inst/plp_models/Analysis_8/plpResult/prediction.rds
inst/plp_models/Analysis_9/plpResult/analysisRef.rds
inst/plp_models/Analysis_9/plpResult/covariateSummary.rds
inst/plp_models/Analysis_9/plpResult/executionSummary.rds
inst/plp_models/Analysis_9/plpResult/inputSetting.rds
inst/plp_models/Analysis_9/plpResult/model/analysisId.rds
inst/plp_models/Analysis_9/plpResult/model/attributes.rds
inst/plp_models/Analysis_9/plpResult/model/cohortId.rds
inst/plp_models/Analysis_9/plpResult/model/covariateMap.rds
inst/plp_models/Analysis_9/plpResult/model/dense.rds
inst/plp_models/Analysis_9/plpResult/model/hyperParamSearch.rds
inst/plp_models/Analysis_9/plpResult/model/index.rds
inst/plp_models/Analysis_9/plpResult/model/metaData.rds
inst/plp_models/Analysis_9/plpResult/model/model
inst/plp_models/Analysis_9/plpResult/model/modelSettings.rds
inst/plp_models/Analysis_9/plpResult/model/outcomeId.rds
inst/plp_models/Analysis_9/plpResult/model/populationSettings.rds
inst/plp_models/Analysis_9/plpResult/model/trainCVAuc.rds
inst/plp_models/Analysis_9/plpResult/model/trainingTime.rds
inst/plp_models/Analysis_9/plpResult/model/transform.rds
inst/plp_models/Analysis_9/plpResult/model/varImp.rds
inst/plp_models/Analysis_9/plpResult/performanceEvaluation.rds
inst/plp_models/Analysis_9/plpResult/prediction.rds
inst/settings/CohortsToCreate.csv
inst/settings/predictionAnalysisList.json
inst/settings/settings.csv
inst/sql/sql_server/CSKIM_Any_Visit.sql
inst/sql/sql_server/CSKIM_Any_death.sql
inst/sql/sql_server/CSKIM_Cancer_death__KOSIS.sql
inst/sql/sql_server/CSKIM_Chronic_lower_respiratory_disease_death__KOSIS.sql
inst/sql/sql_server/CSKIM_Heart_Disease_death__KOSIS.sql
inst/sql/sql_server/CSKIM_Liver_disease_death__KOSIS.sql
inst/sql/sql_server/CSKIM_Pneumonia_death__KOSIS.sql
inst/sql/sql_server/CSKIM_cerebrovascular_death__KOSIS.sql
inst/sql/sql_server/CSKIM_diabetes_death__KOSIS.sql
inst/sql/sql_server/CreateCohortTable.sql
inst/sql/sql_server/GetCounts.sql
man/SkeletonValidationPackage.Rd
man/applyModel.Rd
man/causeImputation.Rd
man/checkInstall.Rd
man/createCohorts.Rd
man/createImputationData.Rd
man/createStudyPopulation.Rd
man/evaluateMultiplePlp.Rd
man/execute.Rd
man/externalValidatePlp.Rd
man/figures/README-pressure-1.png
man/fitPlp.Rd
man/getAttritionTable.Rd
man/getPlpData.Rd
man/getTable1.Rd
man/loadPlpData.Rd
man/loadPlpModel.Rd
man/loadPlpResult.Rd
man/loadPrediction.Rd
man/packageResults.Rd
man/predictAndromeda.Rd
man/predictPlp.Rd
man/predictProbabilities.Rd
man/savePlpData.Rd
man/savePlpModel.Rd
man/savePlpResult.Rd
man/savePrediction.Rd
man/similarPlpData.Rd
man/transportPlpModels.Rd
