Files in tessington/pelagichypoxia
Bayesian analysis of food web responses to low dissolved oxygen
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/.DS_Store
R/Run All Bayesian Models.R
R/calc_dothresh_posterior.R
R/compare_loo.R
R/data.R
R/formatDOdataFN.R
R/generate_posterior_predation.R
R/get_Zoop_numbers_proportions.R
R/get_euphausiid_lengths.R
R/get_euphausiid_numbers.R
R/loadFUNs.R
R/load_dietdata.R
R/load_sa_fish_data.R
R/load_zoop_data.R
R/pelagichypoxia.R
R/plot meanDO by Site.R
R/plot pnasc vs nasc.R
R/plot_backscatter_posteriors.R
R/plot_dietcomp_data.R
R/plot_do_profiles.R
R/plot_feeding_posteriors.R
R/plot_fish_backscatter_data.R
R/plot_fraction_large_euphausiid.R
R/plot_fullness_data.R
R/plot_temp_profiles.R
R/plot_zoop_backscatter_data.R
README.md
Stan/fullmodelv1.1.rds
Stan/fullmodelv1.1.stan
data/.DS_Store
data/.Rapp.history
data/ctd_data.Rdata
data/ctd_data.rda
data/euphausiid_lengths.Rdata
data/euphausiid_lengths.rda
data/feeding_data.Rdata
data/feeding_data.rda
data/fish_backscatter.Rdata
data/fish_backscatter.rda
data/netdepths.Rdata
data/netdepths.rda
data/zoop_backscatter.Rdata
data/zoop_backscatter.rda
data/zoopcomp.Rdata
data/zoopcomp.rda
graphics/.DS_Store
graphics/acoustic_posterior.pdf
graphics/dietcomp.pdf
graphics/doprofiles.pdf
graphics/feeding_posterior.pdf
graphics/fish_sa.pdf
graphics/fraction_large_euphausiid.pdf
graphics/meanDObysite.pdf
graphics/pnascvsnasc.pdf
graphics/tprofiles.pdf
graphics/zoop_by_month.pdf
man/calc.se.Rd
man/calc_dothresh_posterior.Rd
man/compare_loo.Rd
man/ctd_data.Rd
man/euphausiid_lengths.Rd
man/feeding_data.Rd
man/fish_backscatter.Rd
man/fixed.effect.Rd
man/formatDOdataFN.Rd
man/generate_posterior_predation.Rd
man/get.ci.Rd
man/get.percentile.Rd
man/get_Zoop_numbers_proportions.Rd
man/get_euphausiid_lengths.Rd
man/get_euphausiid_numbers.Rd
man/inv.logit.Rd
man/load_dietdata.Rd
man/load_sa_fish_data.Rd
man/load_zoop_data.Rd
man/logit.Rd
man/logit.mod.se.Rd
man/netdepths.Rd
man/pelagichypoxia.Rd
man/plot_backscatter_posteriors.Rd
man/plot_dietcomp_data.Rd
man/plot_do_profiles.Rd
man/plot_feeding_posteriors.Rd
man/plot_fish_backscatter_data.Rd
man/plot_fraction_large_euphausiids.Rd
man/plot_fullness_data.Rd
man/plot_meanDO_by_site.Rd
man/plot_pnasc_vs_nasc.Rd
man/plot_temp_profiles.Rd
man/plot_zoop_backscatter_data.Rd
man/run_all_bayesian_models.Rd
man/zoop_backscatter.Rd
man/zoopcomp.Rd
outputs/.DS_Store
outputs/modelselection/.DS_Store
outputs/modelselection/Pacific HakeSa/model.Rdata
outputs/modelselection/Pacific HakeSa/modelploos.Rdata
outputs/modelselection/Pacific HakeSa/modelwaic.Rdata
outputs/modelselection/Pacific Hakedietcomp/model.Rdata
outputs/modelselection/Pacific Hakedietcomp/modelploos.Rdata
outputs/modelselection/Pacific Hakedietcomp/modelwaic.Rdata
outputs/modelselection/Pacific Hakefullness/model.Rdata
outputs/modelselection/Pacific Hakefullness/modelploos.Rdata
outputs/modelselection/Pacific Hakefullness/modelwaic.Rdata
outputs/modelselection/Pacific HerringSa/model.Rdata
outputs/modelselection/Pacific HerringSa/modelploos.Rdata
outputs/modelselection/Pacific HerringSa/modelwaic.Rdata
outputs/modelselection/Pacific Herringdietcomp/model.Rdata
outputs/modelselection/Pacific Herringdietcomp/modelploos.Rdata
outputs/modelselection/Pacific Herringdietcomp/modelwaic.Rdata
outputs/modelselection/Pacific Herringfullness/model.Rdata
outputs/modelselection/Pacific Herringfullness/modelploos.Rdata
outputs/modelselection/Pacific Herringfullness/modelwaic.Rdata
outputs/modelselection/ZoopSa/model.Rdata
outputs/modelselection/ZoopSa/modelploos.Rdata
outputs/modelselection/ZoopSa/modelwaic.Rdata
outputs/modelselection/fishSa/model.Rdata
outputs/modelselection/fishSa/modelploos.Rdata
outputs/modelselection/fishSa/modelwaic.Rdata
pelagichypoxia.Rproj
