Man pages for tgac-vumc/CGHbase
CGHbase: Base functions and classes for arrayCGH data analysis.
| avedist | Retrieve regions information from cghRegions object. |
| CGHbase-package | CGHbase: Base functions and classes for arrayCGH data... |
| chromosomes | Retrieve feature position data from cgh objects. |
| class.cghCall | Class to contain and describe called array comparative... |
| class.cghRaw | Class to contain and describe raw or normalized array... |
| class.cghRegions | Class to contain and describe array comparative genomic... |
| class.cghSeg | Class to contain and describe segmented array comparative... |
| copynumber | Retrieve copynumber data from cgh objects. |
| frequencyPlot | Visualization of aCGH regions. |
| frequencyPlotCalls | Visualization of aCGH profiles. |
| make_cghRaw | Convert a dataframe or textfile to an object of class cghRaw. |
| plot | Plot aCGH data. |
| probloss | Retrieve call probabilities from a cghCall object. |
| regions | Retrieve regions data from cghRegions object. |
| summaryPlot | Visualization of aCGH profiles. |
| Wilting | Cervical cancer arrayCGH data |
| WiltingCalled | Cervical cancer arrayCGH data called with CGHcall |
| WiltingNorm | Normalized log2 ratios from cervical cancer arrayCGH data. |
| WiltingRaw | Raw log2 ratios from cervical cancer arrayCGH data. |
| WiltingRegions | Regions of cervical cancer arrayCGH data as defined by... |
| WiltingSeg | Segmented log2 ratios from cervical cancer arrayCGH data. |
