Wilting: Cervical cancer arrayCGH data
In tgac-vumc/CGHbase: CGHbase: Base functions and classes for arrayCGH data analysis.
Description
Usage
Format
Source
Description
A dataframe containing 4709 rows and 8 columns with arrayCGH data.
Usage
1
Format
A dataframe containing the following 8 columns:
- Name
The unique identifiers of array elements.
- Chromosome
Chromosome number of each array element.
- Position
Chromosomal position in bp of each array element.
- AdCA10
Raw log2 ratios for cervical cancer sample AdCA10.
- SCC27
Raw log2 ratios for cervical cancer sample SCC27.
- SCC32
Raw log2 ratios for cervical cancer sample SCC32.
- SCC36
Raw log2 ratios for cervical cancer sample SCC36.
- SCC39
Raw log2 ratios for cervical cancer sample SCC39.
Source
Wilting, S.M., Snijders, P.J., Meijer, G.A., Ylstra, B., van den IJssel, P.R., Snijders, A.M., Albertson, D.G., Coffa, J., Schouten, J.P., van de Wiel, M.A., Meijer, C.J., & Steenbergen, R.D. (2006). Increased gene copy numbers at chromosome 20q are frequent in both squamous cell carcinomas and adenocarcinomas of the cervix. Journal of Pathology, 210, 258-259.
tgac-vumc/CGHbase documentation built on May 31, 2019, 8:59 a.m.
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Description Usage Format Source
Description
A dataframe containing 4709 rows and 8 columns with arrayCGH data.
Usage
1 |
Format
A dataframe containing the following 8 columns:
- Name
The unique identifiers of array elements.
- Chromosome
Chromosome number of each array element.
- Position
Chromosomal position in bp of each array element.
- AdCA10
Raw log2 ratios for cervical cancer sample AdCA10.
- SCC27
Raw log2 ratios for cervical cancer sample SCC27.
- SCC32
Raw log2 ratios for cervical cancer sample SCC32.
- SCC36
Raw log2 ratios for cervical cancer sample SCC36.
- SCC39
Raw log2 ratios for cervical cancer sample SCC39.
Source
Wilting, S.M., Snijders, P.J., Meijer, G.A., Ylstra, B., van den IJssel, P.R., Snijders, A.M., Albertson, D.G., Coffa, J., Schouten, J.P., van de Wiel, M.A., Meijer, C.J., & Steenbergen, R.D. (2006). Increased gene copy numbers at chromosome 20q are frequent in both squamous cell carcinomas and adenocarcinomas of the cervix. Journal of Pathology, 210, 258-259.
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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